Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_B07_e530_03.seq
         (1516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    26   0.74 
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    26   0.74 
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    26   0.74 
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    26   0.74 
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    26   0.74 
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    25   2.3  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    23   9.1  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    23   9.1  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    23   9.1  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    23   9.1  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    23   9.1  

>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 26.2 bits (55), Expect = 0.74
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 152 NHSRYGRNRRSSFCYRHTFIDNVP 223
           N+S Y  N     CY   +I+ +P
Sbjct: 90  NYSNYNNNNYKQLCYNINYIEQIP 113


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 26.2 bits (55), Expect = 0.74
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 152 NHSRYGRNRRSSFCYRHTFIDNVP 223
           N+S Y  N     CY   +I+ +P
Sbjct: 90  NYSNYNNNNYKQLCYNINYIEQIP 113


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 26.2 bits (55), Expect = 0.74
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 152 NHSRYGRNRRSSFCYRHTFIDNVP 223
           N+S Y  N     CY   +I+ +P
Sbjct: 90  NYSNYNNNNYKQLCYNINYIEQIP 113


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 26.2 bits (55), Expect = 0.74
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 152 NHSRYGRNRRSSFCYRHTFIDNVP 223
           N+S Y  N     CY   +I+ +P
Sbjct: 90  NYSNYNNNNYKQLCYNINYIEQIP 113


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 26.2 bits (55), Expect = 0.74
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 152 NHSRYGRNRRSSFCYRHTFIDNVP 223
           N+S Y  N     CY   +I+ +P
Sbjct: 90  NYSNYNNNNYKQLCYNINYIEQIP 113


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +2

Query: 152 NHSRYGRNRRSSFCYRHTFIDNVP 223
           N+S Y  N     CY    I+ +P
Sbjct: 90  NYSNYNNNNYKQLCYNINHIEQIP 113


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -1

Query: 448 LHDNNNNNKTLFHFDL 401
           +H+NNNN K L ++++
Sbjct: 90  IHNNNNNYKKLQYYNI 105


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -1

Query: 448 LHDNNNNNKTLFHFDL 401
           +H+NNNN K L ++++
Sbjct: 90  IHNNNNNYKKLQYYNI 105


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -1

Query: 448 LHDNNNNNKTLFHFDL 401
           +H+NNNN K L ++++
Sbjct: 90  IHNNNNNYKKLQYYNI 105


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -1

Query: 448 LHDNNNNNKTLFHFDL 401
           +H+NNNN K L ++++
Sbjct: 90  IHNNNNNYKKLQYYNI 105


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -1

Query: 448 LHDNNNNNKTLFHFDL 401
           +H+NNNN K L ++++
Sbjct: 323 IHNNNNNYKKLQYYNI 338


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 291,715
Number of Sequences: 438
Number of extensions: 5699
Number of successful extensions: 17
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 52993875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)