Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_B06_e522_04.seq
         (1497 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1364 + 26044559-26044672,26045732-26046334                       37   0.047
07_03_1367 + 26072270-26072374,26074047-26074724                       35   0.19 
08_02_0773 + 21043553-21043813,21044775-21045203                       33   0.44 
01_06_1664 - 38984545-38984615,38984706-38984802,38985362-389855...    29   7.2  

>07_03_1364 + 26044559-26044672,26045732-26046334
          Length = 238

 Score = 36.7 bits (81), Expect = 0.047
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +3

Query: 174 LIFSLEFI--QITQTRTRDYDWDLLIFTQQWPPTVCKIWKDNPSHMCNLPKNEDSWTXHG 347
           ++FSL  +   +  T   +  +D + F QQW P+ C        +   LP N  ++T  G
Sbjct: 9   VVFSLVLLLLPLASTSAVEVKFDFMYFVQQWAPSYCSTAPHECEYEPRLPPN--NFTIRG 66

Query: 348 IWPT 359
           +WP+
Sbjct: 67  LWPS 70



 Score = 30.3 bits (65), Expect = 4.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 497 WAHXWPKHGTCAAIXE 544
           W+H W KHGTC+ + +
Sbjct: 114 WSHEWSKHGTCSNLSQ 129


>07_03_1367 + 26072270-26072374,26074047-26074724
          Length = 260

 Score = 34.7 bits (76), Expect = 0.19
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +3

Query: 174 LIFSLEFIQITQTRTRDYDWDLLIFTQQWPPTVCKIWKDNPSHMCNL-PKNEDSWTXHGI 350
           ++FSL  + +      + ++D +   QQWP + C       +H C + P     +T HG+
Sbjct: 9   VVFSLALLLLPLASVAE-EFDFMYLAQQWPDSYCS------THKCLVKPPPPSHFTIHGL 61

Query: 351 WPT 359
           WP+
Sbjct: 62  WPS 64


>08_02_0773 + 21043553-21043813,21044775-21045203
          Length = 229

 Score = 33.5 bits (73), Expect = 0.44
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = +2

Query: 497 WAHXWPKHGTCAA 535
           WAH W KHGTCAA
Sbjct: 113 WAHEWEKHGTCAA 125


>01_06_1664 -
           38984545-38984615,38984706-38984802,38985362-38985523,
           38985736-38985825,38986125-38986226,38986373-38986446,
           38986587-38986615,38986766-38986989
          Length = 282

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
 Frame = +3

Query: 141 MWAXYLFFIVTLIFSLEFIQITQTR----TRDYDWDLLIFTQQWPPTVCKIWKDNPS-HM 305
           +WA  +  +   +F     +    R     +  ++D      QWP T+C   +   + + 
Sbjct: 13  IWAVVVVVVAADLFGAAVARSASARHAVGKKQREFDYFALALQWPGTICASTRHCCAING 72

Query: 306 CNLPKNEDSWTXHGIWPTSLEG 371
           C   +   ++T HG+WP   +G
Sbjct: 73  CCRSEPLQTFTIHGLWPDYDDG 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,146,362
Number of Sequences: 37544
Number of extensions: 283696
Number of successful extensions: 676
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4791670604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)