Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_B06_e522_04.seq
         (1497 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067944-4|AAC17670.2|  279|Caenorhabditis elegans Hypothetical ...    44   2e-04
Z35598-2|CAA84651.2|  656|Caenorhabditis elegans Hypothetical pr...    31   2.8  
U41272-6|AAA82450.2|  331|Caenorhabditis elegans Serpentine rece...    29   8.5  

>AF067944-4|AAC17670.2|  279|Caenorhabditis elegans Hypothetical
           protein K10C9.3 protein.
          Length = 279

 Score = 44.4 bits (100), Expect = 2e-04
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 231 WDLLIFTQQWPPTVCKIWKDNPSHMCNLPKNEDSWTXHGIWPTSLEG 371
           +D L+FT  +P  VC+   D+    C +P     W+ HG+WP    G
Sbjct: 23  FDYLMFTTIYPTAVCRADDDSVPESCEIPSGTPQWSIHGLWPNFENG 69


>Z35598-2|CAA84651.2|  656|Caenorhabditis elegans Hypothetical
           protein F10F2.4 protein.
          Length = 656

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +3

Query: 252 QQWPPTVCKIWKDNPSHMCNLPKNEDSWTXHGIWPTSLE--GEGSKLL 389
           ++W     ++   N SH C LP +ED+WT  G +  SL+  G G+K L
Sbjct: 253 EEWLERKSRVKSLNISH-CQLPLHEDTWTACGQFLHSLDISGIGAKRL 299


>U41272-6|AAA82450.2|  331|Caenorhabditis elegans Serpentine
           receptor, class u protein48 protein.
          Length = 331

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 114 LKTNYLRNNMWAXYLFFIVTLIFSLEFIQITQTRTRDYDWDLLIF 248
           LK  YL + MW  Y     +L+FS+  + +  T TR  +W   +F
Sbjct: 110 LKIIYL-SQMWGTYWSMFSSLLFSIIRMIVYVTPTRHAEWSSYVF 153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,211,861
Number of Sequences: 27780
Number of extensions: 255068
Number of successful extensions: 615
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4308364692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)