Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_B06_e522_04.seq
         (1497 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g02990.1 68415.m00251 ribonuclease 1 (RNS1) identical to ribo...    33   0.37 
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc...    30   3.4  
At1g26820.1 68414.m03268 ribonuclease 3 (RNS3) identical to ribo...    30   3.4  
At2g39780.1 68415.m04884 ribonuclease 2 (RNS2) identical to ribo...    30   4.5  
At3g07610.1 68416.m00911 transcription factor jumonji (jmjC) dom...    29   6.0  
At1g14210.1 68414.m01682 ribonuclease T2 family protein contains...    29   7.9  

>At2g02990.1 68415.m00251 ribonuclease 1 (RNS1) identical to
           ribonuclease SP:P42813 Ribonuclease 1 precursor (EC
           3.1.27.1) {Arabidopsis thaliana}, GI:561998 from
           [Arabidopsis thaliana]
          Length = 230

 Score = 33.5 bits (73), Expect = 0.37
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = +3

Query: 228 DWDLLIFTQQWPPTVCKIWKDNPSHMC--NLPKNEDSWTXHGIWPTSLEG 371
           D+D   F QQWP + C    D     C  N  K    +  HG+WP   +G
Sbjct: 29  DFDFFYFVQQWPGSYC----DTQKKCCYPNSGKPAADFGIHGLWPNYKDG 74


>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
           nuclear ribonucleoprotein Prp4p-related similar to U4/U6
           small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
           sapiens}; contains Pfam PF00400: WD domain, G-beta
           repeat (7 copies)|19877698|gb|AU238529.1|AU238529
          Length = 554

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
 Frame = -3

Query: 376 PSPSKLVGQIPWXVHESSFLG------KLHIWEGLSFQILQTVGGH 257
           P+ + LV Q+ +   E  FL       K++IW G  F +++++ GH
Sbjct: 462 PAHANLVSQVKYEPQEGYFLATASYDMKVNIWSGRDFSLVKSLAGH 507


>At1g26820.1 68414.m03268 ribonuclease 3 (RNS3) identical to
           ribonuclease SP:P42815 Ribonuclease 3 precursor (EC
           3.1.27.1) {Arabidopsis thaliana}
          Length = 222

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +2

Query: 497 WAHXWPKHGTCA 532
           W H W KHGTCA
Sbjct: 108 WTHEWEKHGTCA 119



 Score = 29.1 bits (62), Expect = 7.9
 Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
 Frame = +3

Query: 228 DWDLLIFTQQWPPTVCKIWKDNPSHMCNLP---KNEDSWTXHGIWPTSLEG 371
           D+D   F  QWP   C     +  H C  P   K    +  HG+WP    G
Sbjct: 21  DFDFFYFVLQWPGAYC-----DSRHSCCYPQTGKPAADFGIHGLWPNYKTG 66


>At2g39780.1 68415.m04884 ribonuclease 2 (RNS2) identical to
           ribonuclease 2 precursor SP:P42814, GI:289210; contains
           a ribonuclease T2 family histidine active site signature
           (PDOC00459)
          Length = 259

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
 Frame = +3

Query: 180 FSLEFIQITQTRTRDYDWDLLIFTQQWPPTVCKIWKD--NPSHMCNLPKNEDSWTXHGIW 353
           F+ + I++ +++ R++D+  L  + QWP T C+  +   + +  C        +T HG+W
Sbjct: 18  FAGDVIELNRSQ-REFDYFAL--SLQWPGTYCRGTRHCCSKNACCRGSDAPTQFTIHGLW 74

Query: 354 PTSLEG 371
           P   +G
Sbjct: 75  PDYNDG 80



 Score = 29.5 bits (63), Expect = 6.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 497 WAHXWPKHGTCAA 535
           W H W KHGTC++
Sbjct: 126 WGHEWEKHGTCSS 138


>At3g07610.1 68416.m00911 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam domain, PF02373:
           jmjC domain
          Length = 1027

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = +3

Query: 192 FIQITQTRTRDYDWDLLIFTQQWPPTVCKIWKDN-PSH----MCNLP 317
           F   T  R     W L++  + WPP   K++KDN P H    +C+LP
Sbjct: 584 FTGYTDGRYDRMGWPLVLKLKDWPP--AKVFKDNLPRHAEEFLCSLP 628


>At1g14210.1 68414.m01682 ribonuclease T2 family protein contains
           similarity to RNase GI:7768564 from [Nicotiana tabacum];
           contains Pfam profile PF00445: Ribonuclease T2 family
          Length = 247

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2

Query: 488 TXXWAHXWPKHGTC 529
           T  W H W KHGTC
Sbjct: 111 TNLWEHEWNKHGTC 124


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,431,157
Number of Sequences: 28952
Number of extensions: 236372
Number of successful extensions: 560
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3990377088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)