Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_B04_e506_04.seq
         (1545 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626...   258   8e-69
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679...   255   8e-68
03_05_0996 - 29547974-29547977,29548442-29548620,29548827-295489...    32   1.1  
09_02_0167 + 5221910-5222516,5222826-5224642                           31   2.4  

>01_06_1659 +
           38961637-38961639,38962361-38962433,38962531-38962613,
           38962732-38962858,38962950-38963029,38963112-38963228,
           38963393-38963527,38963714-38963883,38963970-38964087
          Length = 301

 Score =  258 bits (632), Expect = 8e-69
 Identities = 123/223 (55%), Positives = 155/223 (69%)
 Frame = +2

Query: 134 GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 313
           GFVK  K   YFKR+QVKFKRRR+GKTDY AR RL  QDKNKYNTPKYR +   +NKD+T
Sbjct: 3   GFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59

Query: 314 CQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYTG 493
            Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAAYCTG             D  Y G
Sbjct: 60  AQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEG 119

Query: 494 ATEVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFP 673
             E TG++Y VEP D     FR  LDVGL RTTTG RVFGA+KGA+DGGL++PHS KRF 
Sbjct: 120 NVEATGEDYYVEPADE-RRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFA 178

Query: 674 GYDAESKKFNAEVHRAHIFGLHVGRVHA*PLXQEDEDSFKRQF 802
           G+  + K+ ++++HR +I+G HV   +   + +E+ + F+  F
Sbjct: 179 GFKKDEKQLDSDIHRKYIYGGHVAD-YMRSMAEEEPEKFQAHF 220


>01_06_1660 +
           38966999-38967001,38967685-38967757,38967841-38967923,
           38968042-38968168,38968260-38968339,38968428-38968544,
           38968711-38968845,38969046-38969215,38969300-38969417
          Length = 301

 Score =  255 bits (624), Expect = 8e-68
 Identities = 122/223 (54%), Positives = 154/223 (69%)
 Frame = +2

Query: 134 GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 313
           GFVK  K   Y KR+QVKFKRRR+GKTDY AR RL  QDKNKYNTPKYR +   +NKD+T
Sbjct: 3   GFVKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59

Query: 314 CQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYTG 493
            Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAAYCTG             D  Y G
Sbjct: 60  AQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEG 119

Query: 494 ATEVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFP 673
             E TG++Y VEP D     FR  LDVGL RTTTG RVFGA+KGA+DGGL++PHS KRF 
Sbjct: 120 NIEATGEDYYVEPADE-RRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFA 178

Query: 674 GYDAESKKFNAEVHRAHIFGLHVGRVHA*PLXQEDEDSFKRQF 802
           G+  + K+ ++++HR +I+G HV   +   + +E+ + F+  F
Sbjct: 179 GFKKDEKQLDSDIHRKYIYGGHVAD-YMRSMAEEEPEKFQAHF 220


>03_05_0996 -
           29547974-29547977,29548442-29548620,29548827-29548905,
           29549556-29549577,29550370-29550439,29550589-29550667,
           29551252-29551268,29552214-29552295,29553540-29553630,
           29554354-29554498,29554653-29554964
          Length = 359

 Score = 32.3 bits (70), Expect = 1.1
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
 Frame = -1

Query: 726 MCALCTSALNFLDSASYPGNLLIECGTFKPPSTAPFMAPNTRAPVVVRAKPTSK*HLNAP 547
           + AL T  L+F+ + ++P +    CG+   PS        T  P  VR  P       +P
Sbjct: 4   LLALSTPRLHFVAALNHPSSF--PCGSSPLPSLIQCRRRLTNRPATVRLSPAPSPCPMSP 61

Query: 546 GPLST-GSTLYSSPVTSVAPV*RLSKPSLC 460
            PL+T     Y+S    +A    LS  S+C
Sbjct: 62  PPLNTVRCGRYTSTPLDIAACPPLSVLSIC 91


>09_02_0167 + 5221910-5222516,5222826-5224642
          Length = 807

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 690 LRNLMQKYIEHTSLDYMWAEYMRSP*XRKTKILSRDSFGXISKSGVNP 833
           LRNL    +EH  L  +WA   R P   +  I+S DS    +   ++P
Sbjct: 603 LRNLFMMKVEHNYLTELWASIKRMPNLVRLDIISCDSDEVFNMEHLDP 650


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,791,736
Number of Sequences: 37544
Number of extensions: 651515
Number of successful extensions: 1458
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1451
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4977304332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)