Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_B04_e506_04.seq
(1545 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0) 233 2e-61
SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30) 176 3e-44
SB_44680| Best HMM Match : Gemini_V1 (HMM E-Value=4) 30 5.7
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4) 29 7.5
SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05) 29 10.0
SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083) 29 10.0
SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16) 29 10.0
>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
Length = 328
Score = 233 bits (571), Expect = 2e-61
Identities = 124/240 (51%), Positives = 154/240 (64%), Gaps = 37/240 (15%)
Frame = +2
Query: 194 RRREGKTDYYARKR------------------------LVVQDKNKYNTP------KYRL 283
RR +GKTDYYARKR ++ Q++NK P KYR
Sbjct: 17 RRSQGKTDYYARKRLITQDKNKYNTPKYRFVVRITNKDIICQERNKVGGPIFGSTQKYRR 76
Query: 284 IVRLS-NK------DVTCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXX 442
R NK ++AY++++GD ++ +AY+HELP +G+KVGLTNYAAAYCTG
Sbjct: 77 NSRGKYNKRNIFILQTYARIAYAKLDGDRVLASAYAHELPNFGVKVGLTNYAAAYCTGLL 136
Query: 443 XXXXXXXXXXXDSLYTGATEVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMK 622
+YTG +V GDEYNVE VD PGAFRC+LDVGLART+TGARVFGA+K
Sbjct: 137 LARRLLTMLNLHEIYTGTDDVNGDEYNVESVDGSPGAFRCFLDVGLARTSTGARVFGALK 196
Query: 623 GAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVGRVHA*PLXQEDEDSFKRQF 802
GAVDGGL +PHS+KRFPGYD+ESK F+AEVHR HIFG HV + L +EDE+S+KRQF
Sbjct: 197 GAVDGGLEIPHSMKRFPGYDSESKDFSAEVHRNHIFGKHVAE-YMRSLAEEDEESYKRQF 255
>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
Length = 113
Score = 176 bits (429), Expect = 3e-44
Identities = 76/112 (67%), Positives = 89/112 (79%)
Frame = +2
Query: 320 VAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYTGAT 499
+AY+++EGD I+CAAY+HELPRYG+KVGLTNYAAAYCTG +YTG
Sbjct: 1 IAYAKLEGDVIICAAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTKLNLHEIYTGTE 60
Query: 500 EVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPH 655
EV GDEYNVE +D PGAFRC+LDVGLART+TGARVFGA+KGAVDGGL +PH
Sbjct: 61 EVNGDEYNVESIDGSPGAFRCFLDVGLARTSTGARVFGALKGAVDGGLEIPH 112
>SB_44680| Best HMM Match : Gemini_V1 (HMM E-Value=4)
Length = 248
Score = 29.9 bits (64), Expect = 5.7
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = -3
Query: 577 AYIQVTSECSWAIVNWFNIIFITSDF---SGTCV-ETVQAEPLQQSSCQQQTSAVGSSIV 410
A +Q TS WA+ WF +T F SGT V V+ E +Q S VG +
Sbjct: 132 AQVQDTSRFVWALPGWFGNSEVTRHFRGDSGTSVLIRVKGERVQVSRSSSHGGRVG-GVS 190
Query: 409 SQTHLD 392
TH D
Sbjct: 191 RSTHRD 196
>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
Length = 1439
Score = 29.5 bits (63), Expect = 7.5
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = -1
Query: 648 TFKPPSTAPFM-APNTRAPVVVRAKPTSK*HLNAPGPL--STGSTLYSSPVTSVAPV*RL 478
T PP+ P + AP++ P A P L+AP PL ++GS+ SS P R
Sbjct: 557 TAPPPAPPPSVFAPSSAVPTPATAPPPVAATLSAPPPLDSTSGSSTISSATICFGPTNRC 616
Query: 477 SKPS 466
+ S
Sbjct: 617 TTTS 620
>SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)
Length = 791
Score = 29.1 bits (62), Expect = 10.0
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -1
Query: 642 KPPSTAPFMAPNTRAPVVVRAKPTSK*HLNAPGPLS--TGST 523
+P PF+ P++RAP A PT+ P P S TG T
Sbjct: 357 RPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSSQTGKT 398
>SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083)
Length = 624
Score = 29.1 bits (62), Expect = 10.0
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -1
Query: 642 KPPSTAPFMAPNTRAPVVVRAKPTSK*HLNAPGPLS--TGST 523
+P PF+ P++RAP A PT+ P P S TG T
Sbjct: 223 RPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSSQTGKT 264
>SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)
Length = 705
Score = 29.1 bits (62), Expect = 10.0
Identities = 28/88 (31%), Positives = 37/88 (42%)
Frame = -1
Query: 753 CTLPTCSPKMCALCTSALNFLDSASYPGNLLIECGTFKPPSTAPFMAPNTRAPVVVRAKP 574
CT C+ C T A L +Y G + T P+TA + T AP RA P
Sbjct: 271 CTGQKCNTGKCLDPTHADFLLREPTYQG--VGAPKTTASPTTAGVVT-TTGAPSTTRAPP 327
Query: 573 TSK*HLNAPGPLSTGSTLYSSPVTSVAP 490
T+ P +TG +P T+VAP
Sbjct: 328 TTGAVTTTGAPATTG-----APATTVAP 350
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,722,467
Number of Sequences: 59808
Number of extensions: 721648
Number of successful extensions: 1640
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1638
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5035506333
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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