Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_B04_e506_04.seq
         (1545 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical pr...   303   2e-82
AF067610-1|AAC17538.2|  696|Caenorhabditis elegans Hypothetical ...    31   1.7  
Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr...    29   8.8  
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr...    29   8.8  
Z81460-5|CAB03832.1|  952|Caenorhabditis elegans Hypothetical pr...    29   8.8  
Z70209-3|CAA94147.1|  952|Caenorhabditis elegans Hypothetical pr...    29   8.8  
AL132951-9|CAC44304.3|  553|Caenorhabditis elegans Hypothetical ...    29   8.8  

>Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical
           protein F54C9.5 protein.
          Length = 293

 Score =  303 bits (745), Expect = 2e-82
 Identities = 144/228 (63%), Positives = 170/228 (74%)
 Frame = +2

Query: 131 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 310
           MG VKV+KNK YFKRYQVK +RRREGKTDYYARKRL VQDKNKYNTPKYRLIVR++NKDV
Sbjct: 1   MGLVKVIKNKAYFKRYQVKLRRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRITNKDV 60

Query: 311 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYT 490
             Q+AYS+IEGD +V +AYSHELPRYG+KVGLTNYAAAY TG             DS Y 
Sbjct: 61  VAQLAYSKIEGDVVVASAYSHELPRYGLKVGLTNYAAAYATGLLLARRHLKTIGLDSTYK 120

Query: 491 GATEVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRF 670
           G  E+TG++YNVE  +     F+  LD+GLARTTTG+++F  MKG  DGG+NVPHS  RF
Sbjct: 121 GHEELTGEDYNVEE-EGDRAPFKAVLDIGLARTTTGSKIFAVMKGVADGGINVPHSESRF 179

Query: 671 PGYDAESKKFNAEVHRAHIFGLHVGRVHA*PLXQEDEDSFKRQFWKXI 814
            G+D ESK++NAE HR  I G HV   +   L +EDED +KRQF K +
Sbjct: 180 FGFDQESKEYNAEAHRDRILGKHVAD-YMTYLKEEDEDRYKRQFSKFL 226


>AF067610-1|AAC17538.2|  696|Caenorhabditis elegans Hypothetical
           protein F41A4.1 protein.
          Length = 696

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +2

Query: 521 NVEPVDNGPGAFRCYL-DVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKK 697
           N EP++   G F C+L       TT+G+R  G      +  L    + ++FPG    +  
Sbjct: 68  NAEPIEKKNGGFNCHLHSKSPVLTTSGSRTVGTKTCLENKCLKRSFAFEKFPGRSLVNSS 127

Query: 698 F 700
           F
Sbjct: 128 F 128


>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical
           protein F25C8.3b protein.
          Length = 3175

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = +3

Query: 339 RVITLSVL----PTLMNSHAMVSRWV*LTMLLPTALVCC 443
           RV+  ++L    P+L N+ A VSRW  +   LP  + CC
Sbjct: 77  RVVVQNILHGLSPSLSNALASVSRWKLVRAALPHVIQCC 115


>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical
           protein F25C8.3a protein.
          Length = 3184

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = +3

Query: 339 RVITLSVL----PTLMNSHAMVSRWV*LTMLLPTALVCC 443
           RV+  ++L    P+L N+ A VSRW  +   LP  + CC
Sbjct: 77  RVVVQNILHGLSPSLSNALASVSRWKLVRAALPHVIQCC 115


>Z81460-5|CAB03832.1|  952|Caenorhabditis elegans Hypothetical
           protein C04A11.4 protein.
          Length = 952

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
 Frame = -1

Query: 771 CXKGYACTLPTCSPK-MCALCTSALNFLDSASYPGNLLIEC 652
           C  G  C L TC PK    +C +A+   D   Y      +C
Sbjct: 418 CASGDCCDLKTCKPKPRATVCRAAIGICDLDEYCNGETNDC 458


>Z70209-3|CAA94147.1|  952|Caenorhabditis elegans Hypothetical
           protein C04A11.4 protein.
          Length = 952

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
 Frame = -1

Query: 771 CXKGYACTLPTCSPK-MCALCTSALNFLDSASYPGNLLIEC 652
           C  G  C L TC PK    +C +A+   D   Y      +C
Sbjct: 418 CASGDCCDLKTCKPKPRATVCRAAIGICDLDEYCNGETNDC 458


>AL132951-9|CAC44304.3|  553|Caenorhabditis elegans Hypothetical
           protein Y67H2A.2a protein.
          Length = 553

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +2

Query: 110 ISGIF*KMGFVKVVKNKQYFKRYQVKFKRRREGKTDYY 223
           I  IF K+G V+  K +Q  +R+Q+KF   RE +T Y+
Sbjct: 405 IYSIFYKLGKVEE-KERQIIERFQIKF-HEREDRTRYF 440


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,259,231
Number of Sequences: 27780
Number of extensions: 535127
Number of successful extensions: 1220
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1218
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4452547242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)