Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_B03_e498_03.seq
         (1616 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0703 + 6212409-6212456,6212661-6212742,6214031-6214106,621...    34   0.28 
05_07_0066 + 27453611-27453627,27454729-27454872,27455998-274566...    34   0.37 

>08_01_0703 +
           6212409-6212456,6212661-6212742,6214031-6214106,
           6214498-6214594,6214760-6214862,6214973-6215103,
           6215285-6215462,6215528-6215715,6215945-6216154,
           6216231-6216578,6216660-6216786,6217304-6217455
          Length = 579

 Score = 34.3 bits (75), Expect = 0.28
 Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 1/123 (0%)
 Frame = +3

Query: 69  IVAPGYTPEALNILRKKKGGNYCVLQMDPSYEPDLTERKTLYGLSLEQRRNDAKITAGLF 248
           +VAPGYT + L IL K K     +L+   S +  L+ R+   G  L Q  +D       F
Sbjct: 395 VVAPGYTEKGLEIL-KGKSKTLRILEAKRSGKGMLSLRQVSGGW-LAQESDDLTPEDITF 452

Query: 249 GNIVTAKKELPEEA-VRDLIVATIALKYTQSNSVCYARXXXXXXXXXXXXSRIHCTRLAG 425
               T  +  P+++ + D   A + +K+ +SN++  A+            +R+   R+A 
Sbjct: 453 ---TTVSERAPQDSELSDAKFAWLCVKHVKSNAIVIAKNNCMLGMGSGQPNRLESLRIAF 509

Query: 426 GKA 434
            KA
Sbjct: 510 RKA 512


>05_07_0066 +
           27453611-27453627,27454729-27454872,27455998-27456690,
           27457700-27458111,27458220-27458297,27458938-27458953,
           27459038-27459192
          Length = 504

 Score = 33.9 bits (74), Expect = 0.37
 Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +1

Query: 226 RRSLPVCSGIL*QRRRSCP-RRLLGI*SWRPSRSSTLRATPSVTPGTG 366
           RR     +G+  QRR S P  +L+   S  PSRSSTLR T S+ P  G
Sbjct: 220 RRQAAAAAGVKIQRRSSAPAEKLMPPPSTTPSRSSTLRVTSSL-PARG 266


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,612,972
Number of Sequences: 37544
Number of extensions: 295206
Number of successful extensions: 920
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5255754924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)