Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_B03_e498_03.seq
         (1616 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)             147   2e-35
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)                       31   3.4  

>SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score =  147 bits (356), Expect = 2e-35
 Identities = 65/98 (66%), Positives = 81/98 (82%)
 Frame = +3

Query: 66  GIVAPGYTPEALNILRKKKGGNYCVLQMDPSYEPDLTERKTLYGLSLEQRRNDAKITAGL 245
           G++AP Y  EAL +L+KKKGG YC+LQMDPSYEP   E +T++GL LEQ RN+AKI A +
Sbjct: 369 GVIAPSYQNEALEVLKKKKGGKYCILQMDPSYEPPALESRTIFGLQLEQLRNNAKIDADV 428

Query: 246 FGNIVTAKKELPEEAVRDLIVATIALKYTQSNSVCYAR 359
           F N++T +K+LPE AVRDL VA+IALKYTQSNSVCYA+
Sbjct: 429 FKNVMTKRKDLPESAVRDLTVASIALKYTQSNSVCYAK 466


>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 514

 Score = 30.7 bits (66), Expect = 3.4
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 518 ARXXARHXRXERVXRAQHGRVRA-XPPQHRLAARQPR 411
           +R   RH R  R    +H R ++  PP+HR  +R PR
Sbjct: 68  SRTPPRHRRRSRSPNKKHSRSKSRTPPRHRRRSRSPR 104


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,315,089
Number of Sequences: 59808
Number of extensions: 304609
Number of successful extensions: 812
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 16,821,457
effective HSP length: 86
effective length of database: 11,677,969
effective search space used: 5278441988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)