Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_B03_e498_03.seq
         (1616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58747-2|AAQ91905.1|  393|Caenorhabditis elegans Hypothetical pr...   157   2e-38
U58747-1|AAL27234.3|  594|Caenorhabditis elegans Hypothetical pr...   157   2e-38
U58747-3|AAL27233.2|  420|Caenorhabditis elegans Hypothetical pr...    84   9e-34
Z97628-2|CAB10726.2|  427|Caenorhabditis elegans Hypothetical pr...    31   3.1  
Z81080-5|CAB03088.2|  427|Caenorhabditis elegans Hypothetical pr...    31   3.1  
AF067218-1|AAC17021.1| 1451|Caenorhabditis elegans Hypothetical ...    29   9.3  

>U58747-2|AAQ91905.1|  393|Caenorhabditis elegans Hypothetical
           protein C55F2.1c protein.
          Length = 393

 Score =  157 bits (381), Expect = 2e-38
 Identities = 74/135 (54%), Positives = 94/135 (69%)
 Frame = +3

Query: 66  GIVAPGYTPEALNILRKKKGGNYCVLQMDPSYEPDLTERKTLYGLSLEQRRNDAKITAGL 245
           G+VAP + P AL++L KKK GNYCVL+++P+Y P  TE +T++GL L Q+RN+A I A  
Sbjct: 212 GVVAPDFDPAALSLLAKKKNGNYCVLKINPNYLPSETEERTVFGLRLRQKRNNAVINAET 271

Query: 246 FGNIVTAKKELPEEAVRDLIVATIALKYTQSNSVCYARXXXXXXXXXXXXSRIHCTRLAG 425
           F N+V +  EL ++A+ DLIVATIALKY QSNSVC+A             SRIHCTRLAG
Sbjct: 272 FNNVVGSANELNKQAIDDLIVATIALKYAQSNSVCFAHRGQVIGMGAGQQSRIHCTRLAG 331

Query: 426 GKAVLWRXRSHPAVL 470
            KA+ W  R HP VL
Sbjct: 332 DKAMNWWLRQHPTVL 346


>U58747-1|AAL27234.3|  594|Caenorhabditis elegans Hypothetical
           protein C55F2.1b protein.
          Length = 594

 Score =  157 bits (381), Expect = 2e-38
 Identities = 74/135 (54%), Positives = 94/135 (69%)
 Frame = +3

Query: 66  GIVAPGYTPEALNILRKKKGGNYCVLQMDPSYEPDLTERKTLYGLSLEQRRNDAKITAGL 245
           G+VAP + P AL++L KKK GNYCVL+++P+Y P  TE +T++GL L Q+RN+A I A  
Sbjct: 342 GVVAPDFDPAALSLLAKKKNGNYCVLKINPNYLPSETEERTVFGLRLRQKRNNAVINAET 401

Query: 246 FGNIVTAKKELPEEAVRDLIVATIALKYTQSNSVCYARXXXXXXXXXXXXSRIHCTRLAG 425
           F N+V +  EL ++A+ DLIVATIALKY QSNSVC+A             SRIHCTRLAG
Sbjct: 402 FNNVVGSANELNKQAIDDLIVATIALKYAQSNSVCFAHRGQVIGMGAGQQSRIHCTRLAG 461

Query: 426 GKAVLWRXRSHPAVL 470
            KA+ W  R HP VL
Sbjct: 462 DKAMNWWLRQHPTVL 476


>U58747-3|AAL27233.2|  420|Caenorhabditis elegans Hypothetical
           protein C55F2.1a protein.
          Length = 420

 Score = 84.2 bits (199), Expect(2) = 9e-34
 Identities = 36/73 (49%), Positives = 53/73 (72%)
 Frame = +3

Query: 66  GIVAPGYTPEALNILRKKKGGNYCVLQMDPSYEPDLTERKTLYGLSLEQRRNDAKITAGL 245
           G+VAP + P AL++L KKK GNYCVL+++P+Y P  TE +T++GL L Q+RN+A I A  
Sbjct: 134 GVVAPDFDPAALSLLAKKKNGNYCVLKINPNYLPSETEERTVFGLRLRQKRNNAVINAET 193

Query: 246 FGNIVTAKKELPE 284
           F N+V +  E+ +
Sbjct: 194 FNNVVGSANEVSD 206



 Score = 79.0 bits (186), Expect(2) = 9e-34
 Identities = 38/66 (57%), Positives = 44/66 (66%)
 Frame = +3

Query: 273 ELPEEAVRDLIVATIALKYTQSNSVCYARXXXXXXXXXXXXSRIHCTRLAGGKAVLWRXR 452
           +L ++A+ DLIVATIALKY QSNSVC+A             SRIHCTRLAG KA+ W  R
Sbjct: 237 QLNKQAIDDLIVATIALKYAQSNSVCFAHRGQVIGMGAGQQSRIHCTRLAGDKAMNWWLR 296

Query: 453 SHPAVL 470
            HP VL
Sbjct: 297 QHPTVL 302


>Z97628-2|CAB10726.2|  427|Caenorhabditis elegans Hypothetical
           protein F39H2.2a protein.
          Length = 427

 Score = 30.7 bits (66), Expect = 3.1
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -3

Query: 141 KRNSCRLSFSSICSKLRVYTRGRRYRLVPNYLQNRGDPLVXGSAAKS 1
           +R  C L+F  +C K + Y   + + +  NY+   GDP   G   +S
Sbjct: 20  ERPRCSLNFLKLCKK-KYYNLNQFHSIERNYVAQTGDPTGTGKGGES 65


>Z81080-5|CAB03088.2|  427|Caenorhabditis elegans Hypothetical
           protein F39H2.2a protein.
          Length = 427

 Score = 30.7 bits (66), Expect = 3.1
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -3

Query: 141 KRNSCRLSFSSICSKLRVYTRGRRYRLVPNYLQNRGDPLVXGSAAKS 1
           +R  C L+F  +C K + Y   + + +  NY+   GDP   G   +S
Sbjct: 20  ERPRCSLNFLKLCKK-KYYNLNQFHSIERNYVAQTGDPTGTGKGGES 65


>AF067218-1|AAC17021.1| 1451|Caenorhabditis elegans Hypothetical
            protein K10E9.1 protein.
          Length = 1451

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
 Frame = +3

Query: 99   LNILRKKKGGNY--CVLQMDPSYEP-----DLTERKTLYGLSLEQRRN 221
            +NI +    G Y  C++ +  SY+      DL E+K L  L L+QRRN
Sbjct: 924  MNISKSMTQGEYATCIMMLLTSYDSSHFVADLIEKKQLGKLKLQQRRN 971


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,106,609
Number of Sequences: 27780
Number of extensions: 222353
Number of successful extensions: 609
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4701640794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)