Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_B03_e498_03.seq
         (1616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    25   1.4  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    25   1.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   5.6  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   5.6  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
 Frame = +3

Query: 63  GGIVAPGYTPEALNILRKKKGG---NYCVLQMDP-SYE-PDLTERKTLYGLSLEQRRNDA 227
           G +  P +TP A+ +     GG         +DP +YE P+   R+    +       +A
Sbjct: 579 GEVTTPLFTP-AVGVAAASAGGAGGGGARSYVDPHTYEDPNQAVREFAREIDAGYITIEA 637

Query: 228 KITAGLFGNIVTAKKELPEEAVRDLIVATIALK 326
            I  G FG++   K +LP +   ++ VA   LK
Sbjct: 638 IIGGGEFGDVCRGKLKLPPDGRTEIDVAIKTLK 670


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = +3

Query: 90  PEALNILRKKKGGNYCVLQMDPSYE----PDLTERKTLYGLSLEQRRNDAKITAGLFGNI 257
           P +LN++ +K G   C+LQ  P +      D +   + Y +++++      + +GL  NI
Sbjct: 91  PSSLNVISEKIGNGGCLLQPYPDWSWANYKDCSGIVSAYKIAIDKFDRLWVLDSGLINNI 150


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.4 bits (48), Expect = 5.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 317 DGRHDQIPNSLLGQLLLRCYNIPEQTGS 234
           +GR DQIP  +  + LL    I EQ  S
Sbjct: 28  NGREDQIPREMNTERLLPYVEIIEQPAS 55


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.4 bits (48), Expect = 5.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 317 DGRHDQIPNSLLGQLLLRCYNIPEQTGS 234
           +GR DQIP  +  + LL    I EQ  S
Sbjct: 28  NGREDQIPREMNTERLLPYVEIIEQPAS 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,590
Number of Sequences: 438
Number of extensions: 2593
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 57061125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)