Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_B03_e498_03.seq
         (1616 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g11400.2 68414.m01310 expressed protein                             31   2.1  
At1g11400.1 68414.m01309 expressed protein                             31   2.1  
At2g40850.1 68415.m05043 phosphatidylinositol 3- and 4-kinase fa...    29   8.6  
At2g23730.1 68415.m02833 expressed protein                             29   8.6  

>At1g11400.2 68414.m01310 expressed protein
          Length = 204

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 6/117 (5%)
 Frame = +3

Query: 18  QXLVDPPGSAGNSARGGI-VAPGYTPEALNILRKKKGG---NYCVLQMDPSYEPDLTERK 185
           + +++P      + R  I + PGYTPE   +  + KG         Q  P YEPD   + 
Sbjct: 23  ERILEPTRRPDGTLRKPIRIRPGYTPEDEVVKYQSKGSLMKKEMASQGPPGYEPDPAPKP 82

Query: 186 TLYGLSLEQRRNDAKI--TAGLFGNIVTAKKELPEEAVRDLIVATIALKYTQSNSVC 350
                   +R+ + ++  TA    +          ++V  L     AL  + +N VC
Sbjct: 83  KTKAAKRNERKKEKRLQATAEKANSSEDGSASNGSQSVNVLASEMEALDVSSNNDVC 139


>At1g11400.1 68414.m01309 expressed protein
          Length = 204

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 6/117 (5%)
 Frame = +3

Query: 18  QXLVDPPGSAGNSARGGI-VAPGYTPEALNILRKKKGG---NYCVLQMDPSYEPDLTERK 185
           + +++P      + R  I + PGYTPE   +  + KG         Q  P YEPD   + 
Sbjct: 23  ERILEPTRRPDGTLRKPIRIRPGYTPEDEVVKYQSKGSLMKKEMASQGPPGYEPDPAPKP 82

Query: 186 TLYGLSLEQRRNDAKI--TAGLFGNIVTAKKELPEEAVRDLIVATIALKYTQSNSVC 350
                   +R+ + ++  TA    +          ++V  L     AL  + +N VC
Sbjct: 83  KTKAAKRNERKKEKRLQATAEKANSSEDGSASNGSQSVNVLASEMEALDVSSNNDVC 139


>At2g40850.1 68415.m05043 phosphatidylinositol 3- and 4-kinase
           family protein contains Pfam profile PF00454:
           Phosphatidylinositol 3- and 4-kinase
          Length = 561

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 261 TAKKELPEEAVRDLIVATIALKYTQSNSVCYA 356
           T    LPE A+R L+V T+ LK   +  +C A
Sbjct: 346 TELHSLPESAIRVLVVCTVFLKQAAAAGLCLA 377


>At2g23730.1 68415.m02833 expressed protein
          Length = 220

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = +3

Query: 150 DP-SYEPDLTERKTLYGLSLEQRRNDAKITAGLFGNIVTAKKELPEEAVRDLIV-ATIAL 323
           DP +Y+      K +  L+  +R    K+T G+F  +     E+  EA RD+I+    A+
Sbjct: 134 DPIAYKSHKIGLKLVKDLTAARRYIMRKLTVGMFNIVDQFPSEVVSEAARDIIIWKEFAM 193

Query: 324 KYTQSNS 344
           + T+S S
Sbjct: 194 EATRSTS 200


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,401,048
Number of Sequences: 28952
Number of extensions: 211504
Number of successful extensions: 567
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,070,560
effective HSP length: 85
effective length of database: 9,609,640
effective search space used: 4353166920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)