Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_B02_e490_04.seq
         (1555 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.27 
SB_40658| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   1.1  
SB_50032| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   1.4  
SB_59238| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.9  
SB_22720| Best HMM Match : KID (HMM E-Value=0.0014)                    31   2.5  
SB_31789| Best HMM Match : Ion_trans (HMM E-Value=6.3e-37)             31   3.3  
SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)            31   3.3  
SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)              30   4.3  
SB_12282| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.3  
SB_8170| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   5.7  
SB_7552| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   5.7  
SB_44958| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   5.7  
SB_33552| Best HMM Match : MIF (HMM E-Value=9.7)                       30   5.7  
SB_49082| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.6  
SB_47635| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.6  
SB_31108| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.6  
SB_343| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   7.6  

>SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2708

 Score = 34.3 bits (75), Expect = 0.27
 Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
 Frame = -1

Query: 487 FXPRPSSRDLL---IPSTADDGILN*IT*FSKKSAAESTNLDSTCASLAFGSSDSGSKAR 317
           F   P + DL+    P T   G  +    F   + AE  ++DST  + + GSS SG +  
Sbjct: 65  FSLPPDNLDLVGSNTPPTLPPGYDSPADEFPNSNKAEDADIDSTSCTNSHGSSLSGRRGL 124

Query: 316 ADL-GEPLLSKVTPSIKVISLFDLKVSAXXKTFSLRHIYTSSST 188
            D  G+ +  ++T    V++L  ++     K+F L  +     T
Sbjct: 125 EDFKGDDIEDELTQLKAVVALRSIQKGDSPKSFDLSSVCDEGKT 168


>SB_40658| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 32.3 bits (70), Expect = 1.1
 Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +2

Query: 23  TXGSPGLQEFG-XRIERYEGLRGCPTFSRGG-ARDAHRTGIYRSWN 154
           T GSPGLQEF    +  Y G R  P   +G  + D  RT   R+WN
Sbjct: 14  TSGSPGLQEFDISNLVNYVGRRNSPIQEKGAKSSDPART---RTWN 56


>SB_50032| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 14/22 (63%), Positives = 14/22 (63%)
 Frame = -2

Query: 87 PRKPSYRSILXPNSCRPGDPLV 22
          PR   YR  L  NSC PGDPLV
Sbjct: 24 PRGRRYRVSLISNSCSPGDPLV 45


>SB_59238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = -2

Query: 84 RKPSYRSILXPNSCRPGDPLV 22
          R P+ R+ L  NSC PGDPLV
Sbjct: 16 RNPNTRAHLVSNSCSPGDPLV 36


>SB_22720| Best HMM Match : KID (HMM E-Value=0.0014)
          Length = 847

 Score = 31.1 bits (67), Expect = 2.5
 Identities = 18/67 (26%), Positives = 36/67 (53%)
 Frame = +3

Query: 273 IDGVTLESKGSPRSARALEPLSDEPKAREAXVESRLVDSAADFLENYVIQFKMPSSAVEG 452
           ++GV+  S+ S   A+ LE L+ E + +    +SRL +S A+  +   +  K+    +E 
Sbjct: 739 LEGVSKASEQSKTHAQKLESLNKEQENKLVDAQSRLEESEAEGRKTAHL-LKLKEQKIES 797

Query: 453 IRRSLEE 473
           + + +EE
Sbjct: 798 LEKKVEE 804


>SB_31789| Best HMM Match : Ion_trans (HMM E-Value=6.3e-37)
          Length = 583

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 79  FTRLSYF*SRRCARCPPNRNLQILESVAAFWALLRTVSTM 198
           F+ + YF  ++ +  PPN+  Q     AAFW  L T++T+
Sbjct: 334 FSSVIYFTEQKMSDGPPNKPSQFSSIPAAFWYTLVTMTTL 373


>SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)
          Length = 1774

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 17/52 (32%), Positives = 32/52 (61%)
 Frame = +3

Query: 273  IDGVTLESKGSPRSARALEPLSDEPKAREAXVESRLVDSAADFLENYVIQFK 428
            ++ +T+ES+   RSA +L+ + D+ K R A  E R VD+ + ++E+   + K
Sbjct: 1210 LEQLTMESEEMHRSASSLKAIVDKIKERLAESEDR-VDACSSYIEDLEKEIK 1260


>SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)
          Length = 1452

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 186 CVDDDVYMCLKEKVLXYAETLRSKREITLIDGVTLESKGSPRS 314
           CV  D + C   K+L Y ET+  K+ I ++   T+ +K S RS
Sbjct: 761 CVLQDEFYCSPAKILHYVETVFFKKLIAVVQ-KTVRAKQSQRS 802


>SB_12282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 147

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 84 RKPSYRSILXPNSCRPGDPLV 22
          ++P +  +L  NSC PGDPLV
Sbjct: 14 KEPKHHFLLPSNSCSPGDPLV 34


>SB_8170| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 140

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = +3

Query: 186 CVDDDVYMC---LKEKVLXYAETLRSKREITLIDGVTLESKGSPRSARALEPLSDEPK 350
           C D ++  C    KEK+  YA+  R  + +TL +G T+  K      ++  P    P+
Sbjct: 18  CADQEIRQCDQAAKEKMKQYADNKRYVKPLTLAEGDTVLVKRDESKRKSDTPYDARPR 75


>SB_7552| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 84  RKPSYRSILXPNSCRPGDPLV 22
           RK   R +   NSC PGDPLV
Sbjct: 71  RKQRSREVATSNSCSPGDPLV 91


>SB_44958| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = +3

Query: 186 CVDDDVYMC---LKEKVLXYAETLRSKREITLIDGVTLESKGSPRSARALEPLSDEPK 350
           C D ++  C    KEK+  YA+  R  + +TL +G T+  K      ++  P    P+
Sbjct: 72  CADQEIRQCDQAAKEKMKQYADNKRYVKPLTLAEGDTVLVKRDESKRKSDTPYDARPR 129


>SB_33552| Best HMM Match : MIF (HMM E-Value=9.7)
          Length = 148

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = +3

Query: 186 CVDDDVYMC---LKEKVLXYAETLRSKREITLIDGVTLESKGSPRSARALEPLSDEPK 350
           C D ++  C    KEK+  YA+  R  + +TL +G T+  K      ++  P    P+
Sbjct: 20  CADQEIRQCDQAAKEKMKQYADNKRYVKPLTLAEGDTVLVKRDESKRKSDTPYDARPR 77


>SB_49082| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -2

Query: 84 RKPS-YRSILXPNSCRPGDPLV 22
          R P+ YR     NSC PGDPLV
Sbjct: 7  RNPTTYRMFFQSNSCSPGDPLV 28


>SB_47635| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 105 RLKVGQPRKPSYRSILXPNSCRPGDPLV 22
           +L  G P + +    L  NSC PGDPLV
Sbjct: 18  KLVPGPPSRSTVSISLISNSCSPGDPLV 45


>SB_31108| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 105 RLKVGQPRKPSYRSILXPNSCRPGDPLV 22
           +L  G P + +    L  NSC PGDPLV
Sbjct: 18  KLVPGPPSRSTVSISLISNSCSPGDPLV 45


>SB_343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 12/18 (66%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = -2

Query: 72  YRSILXP-NSCRPGDPLV 22
           YR ++ P NSC PGDPLV
Sbjct: 65  YRYVMTPSNSCSPGDPLV 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,734,323
Number of Sequences: 59808
Number of extensions: 363639
Number of successful extensions: 1906
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1901
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5070719664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)