Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_B01_e482_03.seq
         (1436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    39   0.001
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    28   2.8  
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||...    28   3.7  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    27   4.8  

>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 39.1 bits (87), Expect = 0.001
 Identities = 19/46 (41%), Positives = 31/46 (67%)
 Frame = +2

Query: 110 LIYASLGALIFSIYLVYDTQLMMGGKHKYSISPEEYIFAALNLYLD 247
           + +A  G L+F  Y+++DT  ++   H+YS  PEE+I ++L LYLD
Sbjct: 205 MAFAGFGTLVFCGYILFDTYNIL---HRYS--PEEFIMSSLMLYLD 245


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 544 GCSSHKYQLYQRQLDTLKVFVNCKSFYI 461
           G   ++  L  +Q+ + KVF+NC SF+I
Sbjct: 896 GRIDNRSDLISKQIMSRKVFINCSSFFI 923


>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 625

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
 Frame = +1

Query: 493 LKYQVVFGKVGIYETSSHLNISKSTQ*FSYVLINNIIIRIKTPYNGT--LVPFMYRIEFI 666
           L +  +F  + ++ T S L +  S    S  LIN   +    P   T  L+PF Y I + 
Sbjct: 420 LFFAPIFSSIPVWATGSTLVLVGSMMMKSTTLINWSYLGDSIPAFITIALMPFTYSIAYG 479

Query: 667 LISFYQFINLMRSIIY 714
           LI+      L+ SIIY
Sbjct: 480 LIAGIICYALLNSIIY 495


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = +1

Query: 520 VGIYETSSHLNISKSTQ*FSYVLINNIIIRIKTPY--NGTLVPFMYRIEFILISFYQFIN 693
           +GI  T   LN S  +    Y   N+ I+ + + +  +  + PF+  I  + +S  Q   
Sbjct: 131 LGISGTGPSLNASYKSLCKLYSYENSFIVVLNSIFVVSSCIGPFLGSILLLRVSLLQLYL 190

Query: 694 LMRSIIYLFFAFNSLYSSF 750
           +  +I ++ F F+SL + F
Sbjct: 191 ISWTIHFINFVFHSLLAVF 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,790,383
Number of Sequences: 5004
Number of extensions: 67045
Number of successful extensions: 119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 800832734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)