Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_B01_e482_03.seq
         (1436 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0553 - 4119782-4119988,4120160-4120320,4120861-4121155           50   5e-06
03_06_0293 - 32889813-32890019,32890144-32890301,32891310-328914...    44   3e-04
03_05_1105 + 30438140-30438350,30438448-30438926                       43   7e-04
07_01_0554 - 4121692-4121895,4121991-4122148,4123241-4123354,412...    42   0.001
05_04_0254 - 19444409-19444621,19444724-19444887,19444974-194450...    40   0.004
03_06_0292 - 32886148-32886354,32886997-32887154,32887265-328873...    38   0.015
11_06_0192 + 21128298-21128829,21129341-21129407,21131169-211312...    38   0.019

>07_01_0553 - 4119782-4119988,4120160-4120320,4120861-4121155
          Length = 220

 Score = 50.0 bits (114), Expect = 5e-06
 Identities = 23/57 (40%), Positives = 40/57 (70%)
 Frame = +2

Query: 77  EVIVGTNKIATLIYASLGALIFSIYLVYDTQLMMGGKHKYSISPEEYIFAALNLYLD 247
           +++V T K+AT +Y  + AL+FS +++YDT  ++  +H Y    +EY+ AA++LYLD
Sbjct: 152 QMLVPTGKVATTVYGCVAALVFSGFIIYDTDNLI-KRHAY----DEYVTAAISLYLD 203


>03_06_0293 -
           32889813-32890019,32890144-32890301,32891310-32891423,
           32891531-32891777
          Length = 241

 Score = 44.0 bits (99), Expect = 3e-04
 Identities = 21/57 (36%), Positives = 38/57 (66%)
 Frame = +2

Query: 77  EVIVGTNKIATLIYASLGALIFSIYLVYDTQLMMGGKHKYSISPEEYIFAALNLYLD 247
           ++     KI+ +IY  L +L+FS Y++YDT  ++  ++ Y    +EY++AA++LYLD
Sbjct: 173 QIFFPLGKISEMIYGGLASLVFSGYIIYDTDNII-KRYTY----DEYVWAAVSLYLD 224


>03_05_1105 + 30438140-30438350,30438448-30438926
          Length = 229

 Score = 42.7 bits (96), Expect = 7e-04
 Identities = 22/57 (38%), Positives = 36/57 (63%)
 Frame = +2

Query: 77  EVIVGTNKIATLIYASLGALIFSIYLVYDTQLMMGGKHKYSISPEEYIFAALNLYLD 247
           +V     +++ +IY  L AL+F  Y+VYDT  ++    +YS   +EY++AA+ LYLD
Sbjct: 161 QVFFPLGRVSLMIYGGLAALVFCGYIVYDTDNLI---KRYSY--DEYVWAAVALYLD 212


>07_01_0554 -
           4121692-4121895,4121991-4122148,4123241-4123354,
           4123824-4124082
          Length = 244

 Score = 42.3 bits (95), Expect = 0.001
 Identities = 20/57 (35%), Positives = 39/57 (68%)
 Frame = +2

Query: 77  EVIVGTNKIATLIYASLGALIFSIYLVYDTQLMMGGKHKYSISPEEYIFAALNLYLD 247
           +++    +I+ +IY  + +LIFS Y+VYDT  ++  ++ Y    ++Y++AA++LYLD
Sbjct: 177 QILFPLGRISQMIYGGIASLIFSGYIVYDTDNII-KRYTY----DQYVWAAVSLYLD 228


>05_04_0254 -
           19444409-19444621,19444724-19444887,19444974-19445087,
           19446086-19446395
          Length = 266

 Score = 40.3 bits (90), Expect = 0.004
 Identities = 20/54 (37%), Positives = 38/54 (70%)
 Frame = +2

Query: 86  VGTNKIATLIYASLGALIFSIYLVYDTQLMMGGKHKYSISPEEYIFAALNLYLD 247
           +G+  +A  ++  LGAL+FS +++YDT+ ++  +H Y    ++YI+A++ LYLD
Sbjct: 201 LGSGPVA--LFGGLGALVFSGFIIYDTENLI-KRHTY----DDYIWASVELYLD 247


>03_06_0292 -
           32886148-32886354,32886997-32887154,32887265-32887378,
           32887660-32887924
          Length = 247

 Score = 38.3 bits (85), Expect = 0.015
 Identities = 19/56 (33%), Positives = 34/56 (60%)
 Frame = +2

Query: 80  VIVGTNKIATLIYASLGALIFSIYLVYDTQLMMGGKHKYSISPEEYIFAALNLYLD 247
           + +   +   L+Y  + ALIFS +++YDT  ++  ++ Y    +EY+ AA+ LYLD
Sbjct: 180 IFLPMGRTGKLVYGCVAALIFSGFIIYDTDNLI-KRYTY----DEYVAAAITLYLD 230


>11_06_0192 +
           21128298-21128829,21129341-21129407,21131169-21131211,
           21131301-21131367,21131613-21131770,21131863-21132057
          Length = 353

 Score = 37.9 bits (84), Expect = 0.019
 Identities = 18/45 (40%), Positives = 30/45 (66%)
 Frame = +2

Query: 113 IYASLGALIFSIYLVYDTQLMMGGKHKYSISPEEYIFAALNLYLD 247
           IY  L  ++FS ++V+DT  ++  +H Y+    EY+ AA++LYLD
Sbjct: 301 IYGCLATVLFSAFIVFDTNQLI-KRHTYN----EYVIAAISLYLD 340


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,734,623
Number of Sequences: 37544
Number of extensions: 417809
Number of successful extensions: 773
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4559628444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)