Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_B01_e482_03.seq
         (1436 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44648| Best HMM Match : UPF0005 (HMM E-Value=0.00022)               90   5e-18
SB_34537| Best HMM Match : UPF0005 (HMM E-Value=6.5e-05)               53   6e-07

>SB_44648| Best HMM Match : UPF0005 (HMM E-Value=0.00022)
          Length = 192

 Score = 89.8 bits (213), Expect = 5e-18
 Identities = 41/68 (60%), Positives = 50/68 (73%)
 Frame = +2

Query: 95  NKIATLIYASLGALIFSIYLVYDTQLMMGGKHKYSISPEEYIFAALNLYLDXXXXXXXXX 274
           N++  ++YASLGAL+F++YLVYDTQ+MMGG   YSISPEEYIFAALNLYLD         
Sbjct: 125 NRVVQIVYASLGALLFALYLVYDTQIMMGGGKMYSISPEEYIFAALNLYLDIVNMFLYIL 184

Query: 275 XXXGASRN 298
               A+RN
Sbjct: 185 QLISAARN 192


>SB_34537| Best HMM Match : UPF0005 (HMM E-Value=6.5e-05)
          Length = 179

 Score = 52.8 bits (121), Expect = 6e-07
 Identities = 25/49 (51%), Positives = 35/49 (71%)
 Frame = +2

Query: 101 IATLIYASLGALIFSIYLVYDTQLMMGGKHKYSISPEEYIFAALNLYLD 247
           I  L YA LGAL+FS ++V+DT ++M       +SPEEYI A++NLY+D
Sbjct: 118 ILELAYAVLGALLFSAFIVFDTHMLMN-----KMSPEEYILASINLYMD 161


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,473,465
Number of Sequences: 59808
Number of extensions: 488789
Number of successful extensions: 962
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4612946361
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)