Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_B01_e482_03.seq
         (1436 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70753-10|CAD44125.1|  296|Caenorhabditis elegans Hypothetical p...    60   3e-09
Z70753-1|CAD44126.1|  296|Caenorhabditis elegans Hypothetical pr...    60   3e-09
Z70753-11|CAA94766.1|  244|Caenorhabditis elegans Hypothetical p...    58   2e-08
AC024777-1|AAF60563.1|  133|Caenorhabditis elegans Hypothetical ...    55   1e-07
U28740-4|AAA68319.2|  276|Caenorhabditis elegans Temporarily ass...    34   0.29 

>Z70753-10|CAD44125.1|  296|Caenorhabditis elegans Hypothetical
           protein F40F9.1a protein.
          Length = 296

 Score = 60.5 bits (140), Expect = 3e-09
 Identities = 27/50 (54%), Positives = 37/50 (74%)
 Frame = +2

Query: 98  KIATLIYASLGALIFSIYLVYDTQLMMGGKHKYSISPEEYIFAALNLYLD 247
           K   ++YA  GALI  +YL  D Q++MGGK KY ISPEEYIFA++ +++D
Sbjct: 232 KFLMMVYALGGALIMMLYLFLDVQMLMGGK-KYEISPEEYIFASVQIFID 280


>Z70753-1|CAD44126.1|  296|Caenorhabditis elegans Hypothetical
           protein F40F9.1b protein.
          Length = 296

 Score = 60.5 bits (140), Expect = 3e-09
 Identities = 27/50 (54%), Positives = 37/50 (74%)
 Frame = +2

Query: 98  KIATLIYASLGALIFSIYLVYDTQLMMGGKHKYSISPEEYIFAALNLYLD 247
           K   ++YA  GALI  +YL  D Q++MGGK KY ISPEEYIFA++ +++D
Sbjct: 232 KFLMMVYALGGALIMMLYLFLDVQMLMGGK-KYEISPEEYIFASVQIFID 280


>Z70753-11|CAA94766.1|  244|Caenorhabditis elegans Hypothetical
           protein F40F9.2 protein.
          Length = 244

 Score = 57.6 bits (133), Expect = 2e-08
 Identities = 24/45 (53%), Positives = 34/45 (75%)
 Frame = +2

Query: 113 IYASLGALIFSIYLVYDTQLMMGGKHKYSISPEEYIFAALNLYLD 247
           +Y+ L AL+   YL  D QL+MGG+ KY +SPE+YIFAA+ ++LD
Sbjct: 185 VYSGLAALLMMFYLAIDVQLLMGGR-KYELSPEDYIFAAMEIFLD 228


>AC024777-1|AAF60563.1|  133|Caenorhabditis elegans Hypothetical
           protein Y42H9AR.2 protein.
          Length = 133

 Score = 54.8 bits (126), Expect = 1e-07
 Identities = 25/46 (54%), Positives = 35/46 (76%)
 Frame = +2

Query: 110 LIYASLGALIFSIYLVYDTQLMMGGKHKYSISPEEYIFAALNLYLD 247
           ++YA LGAL+   YL  D QL+MGG+ +  ISPEEYIFAA ++++D
Sbjct: 74  IVYAVLGALLCMFYLAIDIQLIMGGR-RVEISPEEYIFAATHVFVD 118


>U28740-4|AAA68319.2|  276|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 132 protein.
          Length = 276

 Score = 33.9 bits (74), Expect = 0.29
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = +2

Query: 128 GALIFSIYLVYDTQLMMGGKHKYSISPEEYIFAALNLYLD 247
           GA +F + LV D  ++M     Y  SPE+YI A ++LY+D
Sbjct: 225 GAGLFCVLLVIDLDMIM-----YRFSPEDYICACVSLYMD 259


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,441,110
Number of Sequences: 27780
Number of extensions: 388386
Number of successful extensions: 802
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4100231132
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)