Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_B01_e482_03.seq
         (1436 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g63310.1 68416.m07121 expressed protein low similarity to N-m...    46   5e-05
At1g03070.1 68414.m00281 expressed protein low similarity to N-m...    44   2e-04
At4g02690.1 68417.m00364 hypothetical protein low similarity to ...    43   4e-04
At4g14730.1 68417.m02265 transmembrane protein-related low simil...    37   0.038
At4g15470.1 68417.m02364 expressed protein low similarity to N-m...    33   0.35 
At3g51860.1 68416.m05687 cation exchanger, putative (CAX3) simil...    30   3.3  
At1g20670.1 68414.m02589 DNA-binding bromodomain-containing prot...    29   5.7  

>At3g63310.1 68416.m07121 expressed protein low similarity to
           N-methyl-D-aspartate receptor-associated protein
           [Drosophila melanogaster] GI:567104; contains Pfam
           profile PF01027: Uncharacterized protein family UPF0005
          Length = 239

 Score = 46.4 bits (105), Expect = 5e-05
 Identities = 23/57 (40%), Positives = 38/57 (66%)
 Frame = +2

Query: 77  EVIVGTNKIATLIYASLGALIFSIYLVYDTQLMMGGKHKYSISPEEYIFAALNLYLD 247
           +++    KI+ +IY  L ++IF  Y+VYDT  ++  +H Y    +EYI+AA++LYLD
Sbjct: 171 QILFPLGKISVMIYGCLASIIFCGYIVYDTDNLI-KRHSY----DEYIWAAVSLYLD 222


>At1g03070.1 68414.m00281 expressed protein low similarity to
           N-methyl-D-aspartate receptor-associated protein
           [Drosophila melanogaster] GI:567104; contains Pfam
           profile PF01027: Uncharacterized protein family UPF0005
          Length = 247

 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 23/57 (40%), Positives = 37/57 (64%)
 Frame = +2

Query: 77  EVIVGTNKIATLIYASLGALIFSIYLVYDTQLMMGGKHKYSISPEEYIFAALNLYLD 247
           ++     +I+ +IY  L A+IF  Y+VYDT  ++    +YS   +EYI+AA++LYLD
Sbjct: 180 QIFFPLGRISVMIYGCLAAIIFCGYIVYDTDNLI---KRYSY--DEYIWAAVSLYLD 231


>At4g02690.1 68417.m00364 hypothetical protein low similarity to
           N-methyl-D-aspartate receptor-associated protein
           [Drosophila melanogaster] GI:567104, NMDA receptor
           glutamate-binding subunit [Rattus sp.] GI:8248741;
           contains Pfam profile PF01027: Uncharacterized protein
           family UPF0005
          Length = 248

 Score = 43.2 bits (97), Expect = 4e-04
 Identities = 21/57 (36%), Positives = 38/57 (66%)
 Frame = +2

Query: 77  EVIVGTNKIATLIYASLGALIFSIYLVYDTQLMMGGKHKYSISPEEYIFAALNLYLD 247
           +++    +++ +IY  L ++IF  Y+VYDT  ++  +H Y    +EYI+AA++LYLD
Sbjct: 180 QILFPLGRVSVMIYGCLVSIIFCGYIVYDTDNLI-KRHTY----DEYIWAAVSLYLD 231


>At4g14730.1 68417.m02265 transmembrane protein-related low
           similarity to transmembrane protein OTMP [Ovis aries]
           GI:9965379
          Length = 235

 Score = 36.7 bits (81), Expect = 0.038
 Identities = 15/50 (30%), Positives = 34/50 (68%)
 Frame = +2

Query: 98  KIATLIYASLGALIFSIYLVYDTQLMMGGKHKYSISPEEYIFAALNLYLD 247
           K++++I++ + +++F  Y+++DT  ++       ++ +EYI AA+ LYLD
Sbjct: 177 KLSSMIFSGIASIVFCGYIIFDTNQLI-----KKLNYDEYITAAIRLYLD 221


>At4g15470.1 68417.m02364 expressed protein low similarity to
           N-methyl-D-aspartate receptor-associated protein
           [Drosophila melanogaster] GI:567104; contains Pfam
           profile PF01027: Uncharacterized protein family UPF0005
          Length = 256

 Score = 33.5 bits (73), Expect = 0.35
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = +2

Query: 113 IYASLGALIFSIYLVYDTQLMMGGKHKYSISPEEYIFAALNLYLD 247
           +Y    AL+F  Y+VYDT  ++  +  Y    +EYI A++ LYLD
Sbjct: 200 VYGGFSALVFCGYIVYDTDNLI-KRFTY----DEYILASVALYLD 239


>At3g51860.1 68416.m05687 cation exchanger, putative (CAX3) similar
           to high affinity calcium antiporter CAX1 [Arabidopsis
           thaliana] gi|9256741|gb|AAB05913; Ca2+:Cation Antiporter
           (CaCA) Family member PMID:11500563; non-consensus
           AT-acceptor splice site at intron 1
          Length = 459

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 86  VGTNKIATLIYASLGALIFSIYLVYDTQLMMGG 184
           +  NK+A + Y+ LG+++ ++ LV  T L  GG
Sbjct: 149 LANNKVAVVKYSLLGSILSNLLLVLGTSLFFGG 181


>At1g20670.1 68414.m02589 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 652

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 455 HRNNHKSGIKKKNRLNHKYYTGNTC*ND 372
           H NN++SG K  N LNH+    N   ND
Sbjct: 53  HNNNNRSGSKNPNSLNHRSKRRNPNSND 80


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,779,660
Number of Sequences: 28952
Number of extensions: 342634
Number of successful extensions: 579
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3797605248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)