Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_A12_e569_02.seq
(1497 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 172 7e-43
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 128 1e-29
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 112 8e-25
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 99 1e-20
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 51 2e-06
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 42 0.001
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.063
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 36 0.063
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 36 0.084
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 36 0.11
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.15
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12) 33 0.59
SB_29067| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.2
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 5.5
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.6
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 172 bits (418), Expect = 7e-43
Identities = 73/157 (46%), Positives = 113/157 (71%)
Frame = +2
Query: 266 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETGKYYVT 445
Y G +DKRT+EK+E+EA+E + ++ +W LD + ER++G T+++ F+T + T
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFT 225
Query: 446 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 625
++DAPGH+ F+ NMI+G +QAD VL+++A GEFE G + GQTREHA+LA T GVK L
Sbjct: 226 LLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGVKHL 285
Query: 626 IVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNP 736
++ VNKMD ++E R+EEIK +++ ++KK+G+NP
Sbjct: 286 VILVNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 128 bits (308), Expect = 1e-29
Identities = 58/60 (96%), Positives = 59/60 (98%)
Frame = +2
Query: 326 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQ 505
MGKGSFKYAWVLDKLKAERERGITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 1 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
Score = 62.5 bits (145), Expect = 8e-10
Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 7/91 (7%)
Frame = +2
Query: 779 NMLEPSTKXPWFKGWLVER------KKGKAEGKCLIGGLDAXLPPARPTDKAXPSSPARR 940
NM+ +++ PWFK W +ER K+ A G L GLD+ LPP+RP+ P +
Sbjct: 53 NMITGTSQMPWFKQWTIERVDPATKKEANASGVTLFEGLDSILPPSRPSGLPL-RLPLQD 111
Query: 941 IQXRRYWNXTPXGRVETGXLKPG-LVXFCPA 1030
+ P GRVETG LKPG +V F P+
Sbjct: 112 VYKIGGIGTVPVGRVETGVLKPGTVVTFSPS 142
Score = 39.1 bits (87), Expect = 0.009
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = +3
Query: 921 RLPLQDVYKXGGIGTVPRG 977
RLPLQDVYK GGIGTVP G
Sbjct: 106 RLPLQDVYKIGGIGTVPVG 124
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 112 bits (269), Expect = 8e-25
Identities = 50/84 (59%), Positives = 65/84 (77%)
Frame = +2
Query: 398 IDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 577
+D+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG GQ
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Query: 578 TREHALLAFTLGVKQLIVGVNKMD 649
TREHA+L +LGV QLIV +NK+D
Sbjct: 61 TREHAILVRSLGVTQLIVAINKLD 84
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 98.7 bits (235), Expect = 1e-20
Identities = 44/49 (89%), Positives = 47/49 (95%)
Frame = +2
Query: 182 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 328
M KEK+HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 51.2 bits (117), Expect = 2e-06
Identities = 29/110 (26%), Positives = 52/110 (47%)
Frame = +2
Query: 215 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGI 394
+I H D+GK+T T L+ G I +EA + K D ++ ER+RGI
Sbjct: 15 IISHPDAGKTTLTEKLLLFGGAI---------QEAGAVKSNKIKKGATSDFMEIERQRGI 65
Query: 395 TIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 544
++ ++ F + I+D PGH+DF ++ + D ++++ G
Sbjct: 66 SVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 42.3 bits (95), Expect = 0.001
Identities = 30/117 (25%), Positives = 52/117 (44%)
Frame = +2
Query: 365 KLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 544
+ K E ER ITI + Y +D PGH + M+ G + D A+L++A
Sbjct: 49 RFKNELERNITIKLG--------YANAKVDCPGHDILMATMLNGAAVMDAALLLIAGNES 100
Query: 545 EFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYI 715
QT EH + +K +++ NK+D + ++ ++++I K V I
Sbjct: 101 ------CPQPQTSEHLAAIEIMKLKHILILQNKIDLVKESQAKDQYDQILKFVQGTI 151
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 36.3 bits (80), Expect = 0.063
Identities = 25/65 (38%), Positives = 31/65 (47%)
Frame = +2
Query: 206 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 385
N ++ HVD GKST L+ G I K + K VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986
Query: 386 RGITI 400
RGIT+
Sbjct: 1987 RGITV 1991
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 36.3 bits (80), Expect = 0.063
Identities = 25/87 (28%), Positives = 36/87 (41%)
Frame = +2
Query: 389 GITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 568
GIT I + + G + +D PGH F G D +++VAA
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMP----- 177
Query: 569 NGQTREHALLAFTLGVKQLIVGVNKMD 649
QT+E A GV +I +NK+D
Sbjct: 178 --QTKEAISHAQAAGV-PIIFAINKID 201
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 35.9 bits (79), Expect = 0.084
Identities = 40/121 (33%), Positives = 57/121 (47%), Gaps = 6/121 (4%)
Frame = +2
Query: 191 EKVHI-NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 367
+K++I N+ VI HVD GKST T L+ K G I A + G+ F D
Sbjct: 14 KKLNIRNMSVIAHVDHGKSTLTDSLVSKAGII----------AAAKAGETRF-----TDT 58
Query: 368 LKAERERGITID---IALWKF--ETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 532
K E++R ITI I+L+ E+ Y+T P R F+ N+I D + + A
Sbjct: 59 RKDEQDRCITIKSTAISLYYELPESDFEYITQPKDPKERGFLINLIDSPGHVDFSSEVTA 118
Query: 533 A 535
A
Sbjct: 119 A 119
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 35.5 bits (78), Expect = 0.11
Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 3/135 (2%)
Frame = +2
Query: 188 KEKV-HINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 358
KE++ + NI V+GHVDSGK++ L DK + ++G SF+ A +
Sbjct: 30 KERILNFNIGVLGHVDSGKTSLAKALSTTASTASFDKNPQSQERGITLDLGFSSFQVA-L 88
Query: 359 LDKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 538
+ L R G D+ +T++D PGH IK +I G A +I G
Sbjct: 89 PEHL---RSAGSEHDLL---------QMTLVDCPGHASLIKTIIGG------AQIIGECG 130
Query: 539 TGEFEAGISKNGQTR 583
T E G ++G+ +
Sbjct: 131 T--IEGGFGQSGKVK 143
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 35.1 bits (77), Expect = 0.15
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Frame = +2
Query: 389 GITIDIA--LWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGI 562
GIT I L K +G+ +T ID PGH F G + D VL+VAA G
Sbjct: 60 GITQHIGAFLVKLPSGEK-ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGV----K 114
Query: 563 SKNGQTREHALLAFTLGVKQLIVGVNKMD 649
++ ++ HA+ A LIV +NK+D
Sbjct: 115 TQTVESIRHAMHAKV----PLIVAINKID 139
>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
Length = 347
Score = 33.1 bits (72), Expect = 0.59
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 9/109 (8%)
Frame = +2
Query: 197 VHINIVVIGHVDSGKST-----TTGHLIYKCGGIDKRTI-EKFEKEA---QEMGKGSFKY 349
+ + + V+G+VD+GKST T G L G +R K E E+ +G +
Sbjct: 228 MEVRVAVVGNVDAGKSTLLGVLTHGELDNGRGTARQRLFRHKHEMESGRTSSVGNDILGF 287
Query: 350 AWVLDKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITG 496
+ + G +D A E+ K +T ID GH ++K I G
Sbjct: 288 DNTGQVVNKAEQHGANVDWAKICKESSK-VITFIDLAGHERYLKTTIFG 335
>SB_29067| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 454
Score = 30.3 bits (65), Expect = 4.2
Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = -3
Query: 979 TPRGTVPIPPXLYTSC--RGRRXSLVSGASRRKXGVKAPNKA 860
TPR P PP L T+ G R L G S K A NKA
Sbjct: 53 TPRNLQPTPPALSTNSPRHGNRRPLTQGGSSSKPSSPAINKA 94
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.9 bits (64), Expect = 5.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 446 IIDAPGHRDFIKNMITGTSQADCAVLIV 529
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3112
Score = 29.1 bits (62), Expect = 9.6
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +2
Query: 650 STEPPYSESRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLE 790
ST S+ FE KK +S+ K +P+ + FVP WHG+ M+E
Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,998,977
Number of Sequences: 59808
Number of extensions: 800401
Number of successful extensions: 1967
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1950
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4847701901
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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