Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_A12_e569_02.seq
         (1497 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   516   e-148
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   503   e-144
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   396   e-112
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...   343   2e-96
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    38   3e-04
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    25   2.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   2.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   3.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   9.0  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
            F2 protein.
          Length = 461

 Score =  516 bits (1274), Expect = e-148
 Identities = 248/284 (87%), Positives = 255/284 (89%), Gaps = 1/284 (0%)
 Frame = +2

Query: 182  MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 361
            MGKEK+HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1    MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 362  DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 541
            DKLKAERERGITIDIALWKFET KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT
Sbjct: 61   DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 120

Query: 542  GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKK 721
            GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE+RFEEIKKEVSSYIKK
Sbjct: 121  GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKK 180

Query: 722  IGYNPAAVAFVPISGWHGDNMLEPSTKXPWFKGWLVERKKGKAEGKCLIGGLDAXLPPAR 901
            IGYNPAAVAFVPISGWHGDNMLE S+K PWFKGW VERK+GK EGKCLI  LDA LPP R
Sbjct: 181  IGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILPPTR 240

Query: 902  PTDKAXPSSPARRIQXRRYWNXTPXGRVETGXLKPGL-VXFCPA 1030
            PTDKA    P + +         P GRVETG LKPG+ V F PA
Sbjct: 241  PTDKAL-RLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPA 283


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
            protein.
          Length = 461

 Score =  503 bits (1240), Expect = e-144
 Identities = 242/284 (85%), Positives = 251/284 (88%), Gaps = 1/284 (0%)
 Frame = +2

Query: 182  MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 361
            MGKEK+HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1    MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 362  DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 541
            DKLKAERERGITIDIALWKFET KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 
Sbjct: 61   DKLKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGI 120

Query: 542  GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKK 721
            GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD T+PPYSE+RFEEIKKEVSSYIKK
Sbjct: 121  GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDMTDPPYSEARFEEIKKEVSSYIKK 180

Query: 722  IGYNPAAVAFVPISGWHGDNMLEPSTKXPWFKGWLVERKKGKAEGKCLIGGLDAXLPPAR 901
            IGYN A+VAFVPISGWHGDNMLEPS K PW+KGW VERK G A+GK LI  LDA LPP+R
Sbjct: 181  IGYNTASVAFVPISGWHGDNMLEPSPKTPWYKGWKVERKDGNADGKTLIEALDAILPPSR 240

Query: 902  PTDKAXPSSPARRIQXRRYWNXTPXGRVETGXLKPG-LVXFCPA 1030
            PTDKA    P + +         P GRVETG LKPG LV F PA
Sbjct: 241  PTDKAL-RLPLQDVYKIGGIGTVPVGRVETGILKPGMLVTFAPA 283


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-alpha
            protein.
          Length = 274

 Score =  396 bits (976), Expect = e-112
 Identities = 192/227 (84%), Positives = 198/227 (87%), Gaps = 1/227 (0%)
 Frame = +2

Query: 353  WVLDKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 532
            WVLDKLKAERERGITIDIALWKFET KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA
Sbjct: 1    WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 60

Query: 533  AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSY 712
            AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE+RFEEIKKEVSSY
Sbjct: 61   AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSY 120

Query: 713  IKKIGYNPAAVAFVPISGWHGDNMLEPSTKXPWFKGWLVERKKGKAEGKCLIGGLDAXLP 892
            IKKIGYNPAAVAFVPISGWHGDNMLE S+K PWFKGW VERK+GK EGKCLI  LDA LP
Sbjct: 121  IKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILP 180

Query: 893  PARPTDKAXPSSPARRIQXRRYWNXTPXGRVETGXLKPGL-VXFCPA 1030
            P RPTDKA    P + +         P GRVETG LKPG+ V F PA
Sbjct: 181  PTRPTDKAL-RLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPA 226


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score =  343 bits (844), Expect = 2e-96
 Identities = 160/172 (93%), Positives = 163/172 (94%)
 Frame = +2

Query: 401 DIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 580
           DIALWKFET KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT
Sbjct: 1   DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 60

Query: 581 REHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPI 760
           REHALLAFTLGVKQLIVGVNKMDSTEPPYSE+RFEEIKKEVSSYIKKIGYNPAAVAFVPI
Sbjct: 61  REHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPI 120

Query: 761 SGWHGDNMLEPSTKXPWFKGWLVERKKGKAEGKCLIGGLDAXLPPARPTDKA 916
           SGWHGDNMLE S+K PWFKGW VERK+GK EGKCLI  LDA LPP RPTDKA
Sbjct: 121 SGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILPPTRPTDKA 172


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 37.5 bits (83), Expect = 3e-04
 Identities = 36/117 (30%), Positives = 52/117 (44%)
 Frame = +2

Query: 440 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 619
           VT +D PGH  FI     G    D  VL+VAA  G  E       QT +   +A    V 
Sbjct: 195 VTFLDTPGHAAFISMRHRGAHITDIVVLVVAADDGVKE-------QTLQSIEMAKDAKV- 246

Query: 620 QLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLE 790
            +IV +NK+D       + ++E  K  +   I+++G     +  V IS   G N+ E
Sbjct: 247 PIIVAINKIDKPNIDIIKVQYELAKHGI--VIEELG---GEIQCVKISALKGINLRE 298



 Score = 24.6 bits (51), Expect = 2.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 194 KVHINIVVIGHVDSGKST 247
           K H  + ++GHVD GK+T
Sbjct: 143 KRHPIVTIMGHVDHGKTT 160


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 741 PSLSYPFLAGTEITCWSRPPXCHGSRDGWLSVKKE 845
           P+L   F  G  + C S  P   G  DG++   KE
Sbjct: 160 PALEEQFATGRVLACISSRPGQCGREDGYILEGKE 194


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +2

Query: 203 INIVVIGHVDSGKST 247
           INI  IGHV  GKST
Sbjct: 43  INIGTIGHVAHGKST 57


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = +3

Query: 807 HGSRDGWL-SVKKERLKVNALLGA---LTPSFRLLAPLTRLFRLPLQDVYK 947
           H  R  W+ S  + ++   +LL +   L+P  R     TRLF   L D+YK
Sbjct: 242 HLERKAWVASFGRPKMTPQSLLPSQTGLSPYLRFGCLSTRLFYYQLTDLYK 292


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 745 DGSRIVTNFLDVGRDFL 695
           DG R+V  F+DV +D +
Sbjct: 531 DGQRLVYQFVDVPKDII 547


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 359,212
Number of Sequences: 438
Number of extensions: 7436
Number of successful extensions: 28
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 52276125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)