Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_A11_e561_01.seq
         (1470 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.06c |||ribose-phosphate pyrophosphokinase |Schizosaccha...    90   6e-19
SPBC3D6.06c |||ribose-phosphate pyrophosphokinase |Schizosacchar...    75   3e-14
SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase Prs1|Schizo...    69   2e-12
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    28   2.8  
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy...    28   2.8  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    28   3.7  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    28   3.7  

>SPCC1620.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 321

 Score = 90.2 bits (214), Expect = 6e-19
 Identities = 42/82 (51%), Positives = 58/82 (70%)
 Frame = +3

Query: 363 NIKVFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNMETCVEIGESVRGEDVYIVQSGSGE 542
           +IK+F+G+SHP+LA+K+  R+G+ LGKV   ++SN ET V IGESVR EDV+I+Q+G G 
Sbjct: 5   SIKIFAGNSHPELAEKVARRIGLSLGKVAVVQYSNRETSVTIGESVRDEDVFILQTGCGS 64

Query: 543 INDX**NYLFMIHALENXVGXR 608
           IND     L MI+A  +    R
Sbjct: 65  INDHLMELLIMINACRSASARR 86


>SPBC3D6.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 341

 Score = 74.5 bits (175), Expect = 3e-14
 Identities = 46/115 (40%), Positives = 59/115 (51%)
 Frame = +3

Query: 357 MPNIKVFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNMETCVEIGESVRGEDVYIVQSGS 536
           M N+ VF   SHP L + I + L +D+G+V   KFSN ET V I +SVRG DVYIV   S
Sbjct: 1   MKNLVVFGTESHPKLTESICEHLCLDIGRVELSKFSNGETSVRIKQSVRGCDVYIVSPAS 60

Query: 537 GEINDX**NYLFMIHALENXVGXRGSLGRNSPXFPLLPXQDXXXXXSQGXPKTXL 701
           G++ND     L MI A +     +  +    P FP     D     S G P + L
Sbjct: 61  GQVNDHLMELLIMISACKTASAKK--VTAVLPVFPYSRQPDQKFSFS-GAPLSDL 112


>SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase
           Prs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 68.9 bits (161), Expect = 2e-12
 Identities = 40/95 (42%), Positives = 53/95 (55%)
 Frame = +3

Query: 357 MPNIKVFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNMETCVEIGESVRGEDVYIVQSGS 536
           M +  +  G SHP+L   I +RLGI    V  K+F+N ET VEI ESVR +DV+I+QSGS
Sbjct: 1   MKSATIIGGGSHPELLHLISNRLGITPCDVSLKRFANGETSVEIRESVRDKDVFILQSGS 60

Query: 537 GEINDX**NYLFMIHALENXVGXRGSLGRNSPXFP 641
             +ND     L +I A +   G    +    P FP
Sbjct: 61  STVNDSLMELLIIISACKG--GSAKRITAVMPYFP 93


>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
 Frame = -3

Query: 508 SPRTDSPISTHVSMLLNFL--VTTLPRSMPSRSTIFWAKSGCELPLKTLMFGILVVSGRT 335
           S +TD P++    +  N +  ++ +P  +PS ST  WA      P  T    I      +
Sbjct: 176 SSKTDDPMANLDIVAFNTIRILSAIPSPLPSSSTSSWADE--PSPSSTETSSIKRAFQES 233

Query: 334 WSNLLT--TSSNVTVDFIDTIHGRV 266
           W + L+   S N+    ++ IH RV
Sbjct: 234 WLSALSLPLSVNLYKQVLNVIHKRV 258


>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 385

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 27/104 (25%), Positives = 43/104 (41%)
 Frame = -3

Query: 514 TSSPRTDSPISTHVSMLLNFLVTTLPRSMPSRSTIFWAKSGCELPLKTLMFGILVVSGRT 335
           +SS  T  PISTH S   N     L  S  S ++  ++ S   +   +     +  S +T
Sbjct: 54  SSSSSTFVPISTHTSSATNTTSGQLSISSSSSTSSEYSSSSIPITTVSSSDSFIPSSSQT 113

Query: 334 WSNLLTTSSNVTVDFIDTIHGRVSSLASSDMRRDNNKINYLCKS 203
            S   +T+ NV V    +I   VSS   S +    +   ++  S
Sbjct: 114 ISASSSTTDNVIVS--SSISSTVSSTPVSTIYSGTSGTTFVSSS 155


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = -3

Query: 337 TWSNLLTTSSNVTVDFIDTIHGRVSSLASSDMRRDNNKINYLCKSNKR 194
           T S+ L+ SS V +  +  +   VSS +SSD+  D N  +Y+  S ++
Sbjct: 180 TPSDRLSPSSLVPLLKLPALDHAVSSSSSSDLPSDPNSASYIASSKQK 227


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = -3

Query: 538 PLPLCTM*TSSPRTDSPISTHVSMLLNFLVTTLPRSMPSRSTIFWA 401
           P P+  + T+SP++++P++   S  L+FL   L     SRS+  +A
Sbjct: 232 PTPVKVLNTTSPKSENPLNQ--SSFLSFLGENLKPKFTSRSSSVYA 275


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,579,413
Number of Sequences: 5004
Number of extensions: 81331
Number of successful extensions: 173
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 818637862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)