Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_A11_e561_01.seq
(1470 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0763 - 24405525-24405701,24406209-24406368,24406924-244070... 65 1e-10
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 37 0.046
06_01_1095 + 8984363-8984789,8985175-8985416,8985500-8985622,898... 33 0.57
07_03_0797 + 21575948-21576042,21576140-21576902,21577134-215773... 33 0.75
08_02_1493 + 27512473-27512557,27512670-27513351,27513459-275135... 30 4.0
03_02_0436 + 8427018-8427707,8429005-8429544 30 4.0
08_02_1204 - 25267546-25268219,25268319-25268452,25269567-252696... 30 5.3
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 30 5.3
11_06_0300 + 22095396-22096145,22096261-22096344,22097062-220973... 29 7.0
03_01_0538 - 4038954-4039444,4040172-4040248,4040838-4040911,404... 29 7.0
01_01_0078 + 587975-588179,588506-588606,589087-589167,589240-59... 29 7.0
09_03_0049 + 11889214-11890302 29 9.3
03_01_0522 - 3919120-3919696,3919835-3919919,3919955-3919985,392... 29 9.3
>06_03_0763 -
24405525-24405701,24406209-24406368,24406924-24407005,
24407098-24407167,24407443-24407607,24407731-24407874,
24408467-24408715,24409006-24409221,24409306-24409398
Length = 451
Score = 65.3 bits (152), Expect = 1e-10
Identities = 33/77 (42%), Positives = 50/77 (64%)
Frame = +3
Query: 354 RMPNIKVFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNMETCVEIGESVRGEDVYIVQSG 533
R +K+FSG+++ LAQ+I LG+DLGKV+ K+F++ E V++ ESVRG DV++VQ
Sbjct: 86 RDSRLKIFSGTANRPLAQEIASYLGVDLGKVLIKRFADGEIYVQLQESVRGCDVFLVQPT 145
Query: 534 SGEINDX**NYLFMIHA 584
+N+ MI A
Sbjct: 146 CSPVNENLMELFVMIDA 162
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 36.7 bits (81), Expect = 0.046
Identities = 13/31 (41%), Positives = 25/31 (80%)
Frame = +3
Query: 366 IKVFSGSSHPDLAQKIVDRLGIDLGKVVTKK 458
+++FSG+++P L+Q+I LG++LGK+ K+
Sbjct: 98 LRIFSGTANPSLSQEIASYLGLELGKINIKR 128
>06_01_1095 + 8984363-8984789,8985175-8985416,8985500-8985622,
8985783-8985899,8986258-8986399,8986587-8986627,
8987194-8987453,8987505-8987607,8987698-8987776,
8987856-8988115
Length = 597
Score = 33.1 bits (72), Expect = 0.57
Identities = 17/42 (40%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Frame = -1
Query: 1443 RPXPPPXXKKKXXKXGX--GGXKKKXPPGGXXXGPPXPXSPP 1324
R PPP KKK K G K PPG P P PP
Sbjct: 62 RSPPPPSKKKKKKKKAADESGRWKSVPPGMRESAAPVPDEPP 103
>07_03_0797 +
21575948-21576042,21576140-21576902,21577134-21577327,
21577667-21577700,21578421-21578485,21579032-21579524
Length = 547
Score = 32.7 bits (71), Expect = 0.75
Identities = 20/65 (30%), Positives = 31/65 (47%)
Frame = +2
Query: 227 VIIPTHIATRERRDATVDCVDEIDSNVRRSSQ*IRPRSTTNYKNAEHQGLQRKLAPGLGP 406
V++ TH+A E V E+D + RS +RP S + E +GL+ + P +G
Sbjct: 188 VVVETHVAPPEMERPKSVGVRELDGGIERSVAPVRPASHEG-RVGEARGLEVQERPRVGD 246
Query: 407 KDRRP 421
RP
Sbjct: 247 VPERP 251
>08_02_1493 +
27512473-27512557,27512670-27513351,27513459-27513522,
27513734-27513961
Length = 352
Score = 30.3 bits (65), Expect = 4.0
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 496 DSPISTHVSMLLNFLVTTLPRSMPSRSTIFWAKSG 392
D ST ++ +T PRS PS + FWAK G
Sbjct: 231 DDATSTFTCNHTDYTITFCPRSTPSSTLRFWAKIG 265
>03_02_0436 + 8427018-8427707,8429005-8429544
Length = 409
Score = 30.3 bits (65), Expect = 4.0
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +2
Query: 740 GGRXPPFFXXGXPXPPXPKIPRXFFLDITPR 832
GG+ PFF P PP P P FF D R
Sbjct: 102 GGQQSPFFPLLPPLPPQPPPPPPFFADFYAR 132
>08_02_1204 - 25267546-25268219,25268319-25268452,25269567-25269661,
25270289-25270304,25270635-25270684,25270960-25271331
Length = 446
Score = 29.9 bits (64), Expect = 5.3
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = -1
Query: 1431 PPXXKKKXXKXGXGGXKKKXPPGGXXXGPPXPXSPP 1324
PP K G GG K G PP P PP
Sbjct: 67 PPSSSSKAAGGGRGGGGKNKGKGVAAAAPPPPPPPP 102
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 29.9 bits (64), Expect = 5.3
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +1
Query: 742 GAXPPXFPNXXPFXPPPQNPKXXFFGYYPP--GG*TPFFXWKP 864
G PP P P+ PPP P+ +G+ PP G PF P
Sbjct: 16 GGFPPQPPPMNPYGPPP--PQQPAYGHMPPPQGAPPPFLAPPP 56
>11_06_0300 + 22095396-22096145,22096261-22096344,22097062-22097304,
22098535-22098702,22098895-22099008,22099378-22099890
Length = 623
Score = 29.5 bits (63), Expect = 7.0
Identities = 11/31 (35%), Positives = 12/31 (38%)
Frame = -1
Query: 1170 PPCXXXKKXXGGGGXXXPPPXXXPQXGGPPR 1078
PP + GGG PPP PPR
Sbjct: 38 PPHLRNRGASSGGGAAAPPPSSSSSSAPPPR 68
>03_01_0538 - 4038954-4039444,4040172-4040248,4040838-4040911,
4041115-4041203,4041481-4041563,4041645-4042233,
4042915-4043101
Length = 529
Score = 29.5 bits (63), Expect = 7.0
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +2
Query: 1361 PPGGXFFFXPPXPXXXXFFFXXGGGXG 1441
PP G +F PP P + GGG G
Sbjct: 162 PPHGQYFLGPPNPMAPAPMYNAGGGGG 188
>01_01_0078 +
587975-588179,588506-588606,589087-589167,589240-590178,
590388-590542,590837-590902,590963-591023,591659-591853,
591939-592049,592116-592280
Length = 692
Score = 29.5 bits (63), Expect = 7.0
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Frame = +1
Query: 739 WGAX-PPXFPNXXPFXPPPQNPKXXFFGYYPPGG*TPFFXWKP 864
WG+ PP N PP + GYYPPGG P P
Sbjct: 181 WGSSAPPSAGNASGLSVPPM----YWQGYYPPGGLPPHLQQPP 219
>09_03_0049 + 11889214-11890302
Length = 362
Score = 29.1 bits (62), Expect = 9.3
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = -3
Query: 1165 LXXXKKXXGGGGAXXXPPPXXPPXXGXPPGG 1073
+ GGGGA PP PP G GG
Sbjct: 35 IASSSASSGGGGAAAPLPPRAPPRVGGGGGG 65
>03_01_0522 -
3919120-3919696,3919835-3919919,3919955-3919985,
3920078-3920158,3920271-3920338,3920645-3920698,
3921023-3922379
Length = 750
Score = 29.1 bits (62), Expect = 9.3
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +3
Query: 753 PXFSXXGALXPPXPKSQGXFFWILPP 830
P FS G L PP P Q F LPP
Sbjct: 590 PPFSAGGTLPPPPPTQQPSAFGTLPP 615
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,558,050
Number of Sequences: 37544
Number of extensions: 1040386
Number of successful extensions: 3324
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3021
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4687251632
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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