Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_A11_e561_01.seq
         (1470 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16635| Best HMM Match : Pribosyltran (HMM E-Value=7.1e-17)          50   4e-06
SB_56877| Best HMM Match : Ion_trans_2 (HMM E-Value=3.1e-11)           32   1.0  
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.8  
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.1  
SB_43690| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.1  
SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31)               29   9.4  
SB_48269| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.4  

>SB_16635| Best HMM Match : Pribosyltran (HMM E-Value=7.1e-17)
          Length = 227

 Score = 50.4 bits (115), Expect = 4e-06
 Identities = 25/35 (71%), Positives = 27/35 (77%)
 Frame = +3

Query: 480 VEIGESVRGEDVYIVQSGSGEINDX**NYLFMIHA 584
           VEI ESVRGEDVYI+QSG GEIND     L MI+A
Sbjct: 2   VEIAESVRGEDVYIIQSGCGEINDNMMELLIMINA 36


>SB_56877| Best HMM Match : Ion_trans_2 (HMM E-Value=3.1e-11)
          Length = 464

 Score = 32.3 bits (70), Expect = 1.0
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
 Frame = -3

Query: 442 LPRSMPSRS-TIFWAKSGCELPLKTLMFGILVVSGRTWSNLLTTSSNVTVDFIDTIHGRV 266
           +PRS+PSR   + W  +G  L +  +  GI  V+    SN++  +S++       +H  +
Sbjct: 117 VPRSVPSRLFAVVWINAG--LVIIAMFMGI--VTSSLSSNMIGNASHL----YGMVHTNI 168

Query: 265 SSLASSDMRRDNNKINYLCKS 203
             LA    RRD + + Y C S
Sbjct: 169 RRLAPVGPRRDASTVYYPCSS 189


>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 31.5 bits (68), Expect = 1.8
 Identities = 15/39 (38%), Positives = 15/39 (38%)
 Frame = -1

Query: 1440 PXPPPXXKKKXXKXGXGGXKKKXPPGGXXXGPPXPXSPP 1324
            P PPP         G G      PPGG    PP P  PP
Sbjct: 953  PPPPPPPGGSAPPPGGGAPPLPPPPGGSAPPPPPPPPPP 991


>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 964

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 32/113 (28%), Positives = 36/113 (31%), Gaps = 4/113 (3%)
 Frame = -1

Query: 1398 GXGGXKKKXPPG-GXXXGPPXPXSPPNKXFFXLXXSRXQKKXPPGXX-GGGPXXXXPPRX 1225
            G G      PPG G   GPP P +            +     PPG   GGGP    PP  
Sbjct: 496  GAGQGGGPPPPGAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPPPGAGQGGGP----PPPG 551

Query: 1224 XXNFFXXXKKKXXFXRXGPPCXXXKKXXG--GGGXXXPPPXXXPQXGGPPRGG 1072
                +             PP    +      G G   PPP    Q GGPP  G
Sbjct: 552  AGQGWGQPPPGAGQGGGPPPPGAGQGGPPPPGAGQEGPPPPGAGQGGGPPPPG 604


>SB_43690| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 780

 Score = 29.5 bits (63), Expect = 7.1
 Identities = 14/39 (35%), Positives = 14/39 (35%)
 Frame = -1

Query: 1440 PXPPPXXKKKXXKXGXGGXKKKXPPGGXXXGPPXPXSPP 1324
            P PPP           GG     PP     GPP P  PP
Sbjct: 689  PPPPPIGGGDPTIWVSGGPPLSAPPLSSTLGPPPPAPPP 727


>SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31)
          Length = 367

 Score = 29.1 bits (62), Expect = 9.4
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +1

Query: 121 EKRRSCIK-NGTTAAQRIPTLTVC 189
           ++R SC+K NGT+ AQ  P  TVC
Sbjct: 245 QRRYSCVKLNGTSMAQNYPPDTVC 268


>SB_48269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1720

 Score = 29.1 bits (62), Expect = 9.4
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 366  IKVFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNMETCV 482
            + +  GS HP+LA  + +R+G + G+ V +K     TC+
Sbjct: 1190 VDILMGSDHPELALALEERVG-EPGEPVARKTPQGWTCI 1227


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,875,273
Number of Sequences: 59808
Number of extensions: 767624
Number of successful extensions: 1868
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1748
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4742061908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)