Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_A11_e561_01.seq
         (1470 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35390.2 68415.m04339 ribose-phosphate pyrophosphokinase 1 / ...    64   3e-10
At2g35390.1 68415.m04338 ribose-phosphate pyrophosphokinase 1 / ...    64   3e-10
At2g44530.1 68415.m05539 ribose-phosphate pyrophosphokinase, put...    63   5e-10
At1g32380.1 68414.m03995 ribose-phosphate pyrophosphokinase 2 / ...    60   5e-09
At3g43270.1 68416.m04567 pectinesterase family protein contains ...    33   0.47 
At3g09090.1 68416.m01069 defective in exine formation protein (D...    30   4.4  
At2g18470.1 68415.m02151 protein kinase family protein contains ...    29   5.8  
At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid t...    29   5.8  
At5g66950.1 68418.m08440 expressed protein                             29   7.7  
At2g24520.1 68415.m02929 ATPase, plasma membrane-type, putative ...    29   7.7  
At1g68640.1 68414.m07843 bZIP family transcription factor (PERIA...    29   7.7  

>At2g35390.2 68415.m04339 ribose-phosphate pyrophosphokinase 1 /
           phosphoribosyl diphosphate synthetase 1 (PRSI) identical
           to phosphoribosyl diphosphate synthetase 1
           (ribose-phosphate pyrophosphokinase 1 (PRS I)
           [Arabidopsis thaliana] GI:633140, SP|Q42581
          Length = 403

 Score = 63.7 bits (148), Expect = 3e-10
 Identities = 33/73 (45%), Positives = 49/73 (67%)
 Frame = +3

Query: 366 IKVFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNMETCVEIGESVRGEDVYIVQSGSGEI 545
           +K+FSG+++P LAQ+I   +G+DLGKV  K+F++ E  V++ ESVRG DVY+VQ      
Sbjct: 93  LKLFSGTANPALAQEIAWYMGLDLGKVNIKRFADGEIYVQLQESVRGCDVYLVQPTCTPT 152

Query: 546 NDX**NYLFMIHA 584
           N+     L M+ A
Sbjct: 153 NENLMELLIMVDA 165


>At2g35390.1 68415.m04338 ribose-phosphate pyrophosphokinase 1 /
           phosphoribosyl diphosphate synthetase 1 (PRSI) identical
           to phosphoribosyl diphosphate synthetase 1
           (ribose-phosphate pyrophosphokinase 1 (PRS I)
           [Arabidopsis thaliana] GI:633140, SP|Q42581
          Length = 352

 Score = 63.7 bits (148), Expect = 3e-10
 Identities = 33/73 (45%), Positives = 49/73 (67%)
 Frame = +3

Query: 366 IKVFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNMETCVEIGESVRGEDVYIVQSGSGEI 545
           +K+FSG+++P LAQ+I   +G+DLGKV  K+F++ E  V++ ESVRG DVY+VQ      
Sbjct: 42  LKLFSGTANPALAQEIAWYMGLDLGKVNIKRFADGEIYVQLQESVRGCDVYLVQPTCTPT 101

Query: 546 NDX**NYLFMIHA 584
           N+     L M+ A
Sbjct: 102 NENLMELLIMVDA 114


>At2g44530.1 68415.m05539 ribose-phosphate pyrophosphokinase,
           putative / phosphoribosyl diphosphate synthetase,
           putative very strong similarity to phosphoribosyl
           pyrophosphate synthase [Spinacia oleracea] GI:4902849;
           contains Pfam profile PF00156: Phosphoribosyl
           transferase domain
          Length = 394

 Score = 62.9 bits (146), Expect = 5e-10
 Identities = 36/85 (42%), Positives = 54/85 (63%)
 Frame = +3

Query: 330 DHVLPLTTRMPNIKVFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNMETCVEIGESVRGE 509
           D +   TTR+   ++FSG+++P LAQ+I   LG+DLGK+  K+F++ E  V++ ESVRG 
Sbjct: 69  DSIYQNTTRL---RIFSGTANPILAQEISCYLGLDLGKIKIKRFADGEIYVQLQESVRGC 125

Query: 510 DVYIVQSGSGEINDX**NYLFMIHA 584
           DV++VQ      N+     L MI A
Sbjct: 126 DVFLVQPTCPPANENLMELLVMIDA 150


>At1g32380.1 68414.m03995 ribose-phosphate pyrophosphokinase 2 /
           phosphoribosyl diphosphate synthetase 2 (PRS2) identical
           to SP:Q42583 from [Arabidopsis thaliana]; strong
           similarity to phosphoribosyl diphosphate synthetase 1
           (ribose-phosphate pyrophosphokinase 1 (PRS I)
           [Arabidopsis thaliana] GI:633140, SP|Q42581
          Length = 400

 Score = 59.7 bits (138), Expect = 5e-09
 Identities = 30/73 (41%), Positives = 49/73 (67%)
 Frame = +3

Query: 366 IKVFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNMETCVEIGESVRGEDVYIVQSGSGEI 545
           +K+FSG+++P L+Q+I   +G++LGKV  K+F++ E  V++ ESVRG DV++VQ      
Sbjct: 90  LKLFSGTANPALSQEIAWYMGLELGKVSIKRFADGEIYVQLKESVRGCDVFLVQPTCTPT 149

Query: 546 NDX**NYLFMIHA 584
           N+     L M+ A
Sbjct: 150 NENLMELLIMVDA 162


>At3g43270.1 68416.m04567 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 527

 Score = 33.1 bits (72), Expect = 0.47
 Identities = 19/71 (26%), Positives = 31/71 (43%)
 Frame = +3

Query: 372 VFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNMETCVEIGESVRGEDVYIVQSGSGEIND 551
           + S S  P+        +G DL   ++   SN +TC++  E   G    IV  G  ++  
Sbjct: 98  IISASQSPNGKDNSTGDVGSDLRTWISAALSNQDTCLDGFEGTNGIIKKIVAGGLSKVGT 157

Query: 552 X**NYLFMIHA 584
              N L M+H+
Sbjct: 158 TVRNLLTMVHS 168


>At3g09090.1 68416.m01069 defective in exine formation protein
           (DEX1) identical to defective in exine formation
           [Arabidopsis thaliana] gi|11138669|gb|AAG31444; contains
           Pfam domain PF01839: FG-GAP repeat
          Length = 896

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -3

Query: 346 SGRTWSNLLTTSSNVTVDFIDTIHGRVSSLASSD--MRRDNNKINYLCK 206
           S  T +N  TT+ NVTV     +HG  S +++ +   R +NN+   + K
Sbjct: 198 SSTTQTNATTTTPNVTVSMTKEVHGANSYVSTQEDQKRPENNQTEAIVK 246


>At2g18470.1 68415.m02151 protein kinase family protein contains Pfam
            PF00069: Protein kinase domain
          Length = 633

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 18/71 (25%), Positives = 22/71 (30%), Gaps = 2/71 (2%)
 Frame = -1

Query: 1440 PXPPPXXKKKXX--KXGXGGXKKKXPPGGXXXGPPXPXSPPNKXFFXLXXSRXQKKXPPG 1267
            P PP            G GG +      G    PP   SPP+        +   +  PPG
Sbjct: 62   PNPPNSSNNSPSPPSQGGGGERGNGGNNGGNDTPPSRGSPPSPPSRSNGDNGGSRSSPPG 121

Query: 1266 XXGGGPXXXXP 1234
              GG      P
Sbjct: 122  DTGGSRSDNPP 132


>At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid
            transfer protein (LTP) family protein similar to auxin
            down regulated GB:X69640 GI:296442 from [Glycine max];
            contains Pfam profile PF00234: Protease inhibitor/seed
            storage/LTP family
          Length = 297

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = -1

Query: 1140 GGGGXXXPPPXXXPQXGG--PPRGG 1072
            GGGG   PPP    + GG  PP GG
Sbjct: 46   GGGGGSKPPPHHGGKGGGKPPPHGG 70


>At5g66950.1 68418.m08440 expressed protein
          Length = 870

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 378 SGSSHPDLAQKIVDRLGIDLG 440
           SG  HP++ QK+ +R GI LG
Sbjct: 766 SGMVHPEIVQKLAEREGISLG 786


>At2g24520.1 68415.m02929 ATPase, plasma membrane-type, putative /
           proton pump, putative strong similarity to P-type
           H(+)-transporting ATPase from [Phaseolus vulgaris]
           GI:758250, [Lycopersicon esculentum] GI:1621440,
           SP|Q03194 {Nicotiana plumbaginifolia}, [Solanum
           tuberosum] GI:435001; contains InterPro accession
           IPR001757: ATPase, E1-E2 type
          Length = 931

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = -3

Query: 487 ISTHVSMLLNFLVTTLPRSMPSRSTIFWAKSGCE-LPLKTLMFGI-LVVSGRTWSNLLTT 314
           ++T +++  N+    +  +    + + W  S    +PL  L FGI  V+SG+ W NLL  
Sbjct: 779 VATFIAVYANWSFARIEGAGWGWAGVIWLYSFLTYIPLDLLKFGIRYVLSGKAWLNLLEN 838

Query: 313 SSNVT 299
            +  T
Sbjct: 839 KTAFT 843


>At1g68640.1 68414.m07843 bZIP family transcription factor
           (PERIANTHIA) identical to transcription factor
           PERIANTHIA GB:AAD19660 GI:4378757 from [Arabidopsis
           thaliana]
          Length = 452

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +3

Query: 360 PNIKVFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNMETCVEIGESVRGEDVYIVQSGSG 539
           PN+ + S + H      ++D  G   G +  +     E C++ G+ V  +   +V  G G
Sbjct: 48  PNVTIASANLHYTTFDTVMDCGGGGGGGLRERLEGGEEECLDTGQLVYQKGTRLVGGGVG 107

Query: 540 EIN 548
           E+N
Sbjct: 108 EVN 110


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,380,448
Number of Sequences: 28952
Number of extensions: 647620
Number of successful extensions: 1587
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1479
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3903629760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)