Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_A10_e553_02.seq
         (1501 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    30   0.95 
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    28   2.9  
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    28   2.9  

>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 29.9 bits (64), Expect = 0.95
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = +2

Query: 281  GGTAYQHNKVNQWTSAVVESCL--GQLTKLQKPYKYIVTCTIMQKNGAGLHTAS-SC 442
            G  A    K+N  TS+++  C+  G LTK   PY ++ T T+    G+ ++ +  SC
Sbjct: 904  GLDAAMKGKMNGLTSSIINKCIPDGLLTKF--PYNHMQTMTVSGAKGSNVNVSQISC 958


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1088

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 17/80 (21%), Positives = 36/80 (45%)
 Frame = -1

Query: 370  FL*FRQLSQTRFDNSRGPLIYFIVLVSGASN*IFNSLFDYFTHIVYNELIFFCQIVTFFH 191
            FL    L     D  +G +   I L +      +  +FD    + ++ L+     V   +
Sbjct: 843  FLPIDNLLGNNSDLMKGYVTVCIELYTDFYKSAYKEVFDSLQRLQFDALLLIRMEVRLQY 902

Query: 190  LHDLNATISIPSYL*TVKYK 131
            +H +N ++++P Y+  V+Y+
Sbjct: 903  IHSINQSVNLPDYV--VEYR 920


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +2

Query: 182 VMEVKECNDLAEENQFIVDDVSKIIKEAIENSIGGTAYQHNKVNQWTSAV 331
           V+ V +C+ +     FI+ D   + K AI  S G       K+N + S V
Sbjct: 67  VLTVDDCSGMVLRVVFIIQDDFSMSKRAISMSPGNVVCVFGKINSFRSEV 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,884,978
Number of Sequences: 5004
Number of extensions: 90943
Number of successful extensions: 188
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 838459602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)