Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_A10_e553_02.seq
         (1501 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0466 + 4105524-4105812,4105975-4106356,4107042-4109073           30   5.4  
01_03_0214 + 13863123-13863593,13863671-13864132,13864308-138650...    30   5.4  
04_04_0994 + 29980076-29980441,29980900-29980998,29981075-299816...    29   7.2  

>08_01_0466 + 4105524-4105812,4105975-4106356,4107042-4109073
          Length = 900

 Score = 29.9 bits (64), Expect = 5.4
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +1

Query: 226  IHCRRCE*NNQRGY*KFNWRHRLPTQ*SKSMDLGCCRILFGT-VDEITETLQIYSDMHNN 402
            +H R  +  N  G+ K    + LP+   + + + CCR   G  V+E    L+  +D H N
Sbjct: 825  VHVRFLKDANMLGFDKLGLEN-LPSSLKRIIVVICCRDASGAEVEEAQAALEHATDSHAN 883

Query: 403  AKKWCWASYGV 435
            + K     YGV
Sbjct: 884  SPKLTIMRYGV 894


>01_03_0214 +
           13863123-13863593,13863671-13864132,13864308-13865038,
           13865121-13865291,13865371-13865629,13866069-13866158
          Length = 727

 Score = 29.9 bits (64), Expect = 5.4
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = -2

Query: 504 QYMVLFS-QRTVQEPSVLLSQKHEDAV*SPAPFFCIIVHVTIYL*GFCNFVNCPKQDSTT 328
           QYM L + +R ++E S++    H+       PF   + ++TI    F +F+  PK D  T
Sbjct: 497 QYMELSNAKRKMRESSIVGHHDHQ-------PFLSSLAYITIGFDDFFDFLRIPKLD--T 547

Query: 327 AEVH*FTLLCW 295
             +  ++L CW
Sbjct: 548 RLLKSYSLFCW 558


>04_04_0994 +
           29980076-29980441,29980900-29980998,29981075-29981612,
           29982211-29982494,29983014-29983034,29983238-29983452,
           29983538-29983691,29984089-29984220
          Length = 602

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -3

Query: 416 HHFFALLCMSLYICKVSVISSTV 348
           HHFF L CM  Y CK+ V   TV
Sbjct: 344 HHFFCLKCMQTY-CKMHVKEGTV 365


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,919,633
Number of Sequences: 37544
Number of extensions: 542676
Number of successful extensions: 867
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4803272712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)