Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_A10_e553_02.seq
         (1501 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71259-5|CAA95796.1|  106|Caenorhabditis elegans Hypothetical pr...    82   1e-15
Z66500-5|CAA91306.1|  168|Caenorhabditis elegans Hypothetical pr...    63   6e-10
U40938-8|AAA81699.1|  123|Caenorhabditis elegans Hypothetical pr...    53   6e-07
Z35719-3|CAA84797.1|  347|Caenorhabditis elegans Hypothetical pr...    31   2.1  
AL117195-1|CAB60764.2|  368|Caenorhabditis elegans Hypothetical ...    30   3.7  

>Z71259-5|CAA95796.1|  106|Caenorhabditis elegans Hypothetical
           protein F13G3.4 protein.
          Length = 106

 Score = 81.8 bits (193), Expect = 1e-15
 Identities = 40/101 (39%), Positives = 57/101 (56%), Gaps = 2/101 (1%)
 Frame = +2

Query: 236 DDVSKIIKEAIENSIGG-TAYQHNKVNQWTSAVVESCLGQLTKLQKPYKYIVTCTIMQ-K 409
           +DV  IIK+ ++  +G  T Y H    QW    VE    +L    KPYKY+VT + +Q  
Sbjct: 6   EDVHMIIKQVLDEVVGASTQYTHKDSVQWNQKAVEQITKKLVAAGKPYKYVVTSSFLQIS 65

Query: 410 NGAGLHTASSCFWDNNTDGSCTVRWENKTMYCIVSVFGLGI 532
           +G+GL+ ++  +W+  TD S   RWE KTM  IV VF + I
Sbjct: 66  SGSGLNVSTISYWNKVTDSSYMYRWEAKTMLAIVYVFAIAI 106


>Z66500-5|CAA91306.1|  168|Caenorhabditis elegans Hypothetical
           protein T05C12.5 protein.
          Length = 168

 Score = 62.9 bits (146), Expect = 6e-10
 Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
 Frame = +2

Query: 239 DVSKIIKEAIENSIGGTAYQHNKVNQWTSAVVESCLGQLTKLQKPYKYIVTCTIMQK-NG 415
           ++  II+++ ++ IG T Y   K++ W S ++++    L KL    K++V CTI  K + 
Sbjct: 66  EIDLIIQKSFDSIIGKTPYSPFKMSDWMSKMIQTISDNLVKLNGSKKFLVHCTISAKTDN 125

Query: 416 AGLHTASSCFWDNNTDGSCTVRWENKTMYCIVSVF 520
             + TA+ C WD   D +    W +KT++  V VF
Sbjct: 126 LAICTANMCSWDTTKDTAYYSEWMSKTIFGAVQVF 160


>U40938-8|AAA81699.1|  123|Caenorhabditis elegans Hypothetical
           protein D1009.5 protein.
          Length = 123

 Score = 52.8 bits (121), Expect = 6e-07
 Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
 Frame = +2

Query: 242 VSKIIKEAIENSIGG-TAYQHNKVNQWTSAVVESCLGQLTKLQKP-YKYIVTCTIMQKNG 415
           V+ +I+E +   +G  T Y  ++    +  +  S   +L  LQ P YKY++   I ++ G
Sbjct: 24  VAGMIQEILGEKLGALTIYNVDEAELVSKDISASIRERLKGLQLPRYKYVIQTMIAEQCG 83

Query: 416 AGLHTASSCFWDNNTDGSCTVRWENKTMYCIVSVFGL 526
            G  TA  C WD + DG  T R+   +++C V VF +
Sbjct: 84  NGATTAVQCVWDEDCDGYLTQRYVTGSIWCEVLVFAI 120


>Z35719-3|CAA84797.1|  347|Caenorhabditis elegans Hypothetical
           protein F17C8.5 protein.
          Length = 347

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -3

Query: 449 PKNMKTPYEAQHHFFALLCMSLYICKVSVISST 351
           P+N +TP  +  H + +   SL +C +S++SS+
Sbjct: 187 PENAETPSNSLQHDYLIFLSSLLLCSISLLSSS 219


>AL117195-1|CAB60764.2|  368|Caenorhabditis elegans Hypothetical
           protein Y57A10A.2 protein.
          Length = 368

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -2

Query: 579 INVFDFMIKFRDNICYMPRPKTETMQYMVLFSQRTVQEPSVLLSQKHE 436
           IN  DF+ KFR  +CY+  P+ + ++  +  S  T  +  +  +  H+
Sbjct: 239 INFHDFLKKFRKFLCYLEIPELDGLKSRINISIETTSDEILEFADLHK 286


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,150,647
Number of Sequences: 27780
Number of extensions: 524174
Number of successful extensions: 1066
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1065
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4318771370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)