Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_A10_e553_02.seq
         (1501 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61140.1 68414.m06888 SNF2 domain-containing protein / helica...    36   0.091
At2g37420.1 68415.m04589 kinesin motor protein-related                 32   1.1  
At5g15470.1 68418.m01811 glycosyl transferase family 8 protein c...    31   1.5  
At3g01040.1 68416.m00005 glycosyl transferase family 8 protein c...    31   2.0  
At4g31880.1 68417.m04531 expressed protein                             30   4.5  
At4g13370.1 68417.m02090 expressed protein                             29   6.0  
At5g17090.1 68418.m02002 expressed protein                             29   7.9  

>At1g61140.1 68414.m06888 SNF2 domain-containing protein / helicase
           domain-containing protein / zinc finger protein-related
           similar to ATPase [Homo sapiens] GI:531196; contains
           Pfam profiles PF00271: Helicase conserved C-terminal
           domain, PF00176: SNF2 family N-terminal domain, PF00097:
           Zinc finger, C3HC4 type (RING finger)
          Length = 1287

 Score = 35.5 bits (78), Expect = 0.091
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +2

Query: 269 ENSIGGTAYQHNKVNQWTSAVVESCLGQLTKLQKPYKYIVTCTIMQKNGAGLHTASSCFW 448
           E S+   AY   + N+W S    S +   T ++K Y Y+   T +    +G   +S+ F+
Sbjct: 360 EFSVRDDAYLSGETNRWWSGASSSAVSYQTDIEKGYSYMAPQTALPSQDSG-KISSNHFY 418

Query: 449 DNNT 460
           D++T
Sbjct: 419 DSDT 422


>At2g37420.1 68415.m04589 kinesin motor protein-related 
          Length = 1039

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
 Frame = +2

Query: 206  DLAEENQFIVDDVSKIIKEAIENSIGGTAYQHNKVN----------QWTSAVVESCLGQL 355
            D+A+EN+ + D+ +        N +  T   H  VN          + T A+VE+C+ Q+
Sbjct: 889  DMAKENEKVQDEFTSTFSSMDANFVSRTNELHAAVNDSLMQDRENKETTEAIVETCMNQV 948

Query: 356  TKLQKPYKYIVT 391
            T LQ+ +   V+
Sbjct: 949  TLLQENHGQAVS 960


>At5g15470.1 68418.m01811 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 532

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -1

Query: 511 DNAVHGFIFPTNSARAVSVIVPKT*RRRMKPSTIFLH 401
           DNA H FI  T++  A SV+V    +   KP  I  H
Sbjct: 203 DNAYHHFILSTDNILAASVVVSSAVQSSSKPEKIVFH 239


>At3g01040.1 68416.m00005 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 533

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 511 DNAVHGFIFPTNSARAVSVIVPKT*RRRMKPSTIFLH 401
           DNA H F+  T++  A SV+V    +   KP  I  H
Sbjct: 204 DNAYHHFVLATDNILAASVVVSSAVQSSSKPEKIVFH 240


>At4g31880.1 68417.m04531 expressed protein
          Length = 873

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 13/55 (23%), Positives = 28/55 (50%)
 Frame = +2

Query: 209 LAEENQFIVDDVSKIIKEAIENSIGGTAYQHNKVNQWTSAVVESCLGQLTKLQKP 373
           LAE  Q   D +   +   ++  +GG  ++H+ V+      V +C+ ++T++  P
Sbjct: 40  LAEVEQSPPDSMQNALTPLMKGLVGGKLFKHSDVD--VKVAVAACISEITRITAP 92


>At4g13370.1 68417.m02090 expressed protein
          Length = 673

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +2

Query: 203 NDLAEENQF--IVDDVSKIIKEAIENSIGGTAYQHNKVNQWTSAVVESCLGQLTKLQKPY 376
           N L   N+F  I +DV K  K A ENS   ++ Q N ++ W  A + + L ++  L K +
Sbjct: 483 NPLRIINEFLKIYEDVMKYSKIASENSFSLSSDQQNPISLWVEAALATNL-EVVSLVKSH 541

Query: 377 K 379
           +
Sbjct: 542 E 542


>At5g17090.1 68418.m02002 expressed protein
          Length = 230

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 21/79 (26%), Positives = 36/79 (45%)
 Frame = +2

Query: 185 MEVKECNDLAEENQFIVDDVSKIIKEAIENSIGGTAYQHNKVNQWTSAVVESCLGQLTKL 364
           ME +E    A EN+  + D    I +AI+N + G AY +    ++ + +  SC+ +L  L
Sbjct: 104 MEYREVRIQALENRGFLPDPFNFI-DAIQN-LDGPAYDNMTNREYLAGLASSCVKKLNDL 161

Query: 365 QKPYKYIVTCTIMQKNGAG 421
           +      V+       G G
Sbjct: 162 KAKTVEFVSIVRATTTGGG 180


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,143,511
Number of Sequences: 28952
Number of extensions: 458313
Number of successful extensions: 829
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4000015680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)