Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_A08_e537_02.seq
         (1482 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    27   0.27 
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    27   0.27 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   1.9  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 27.5 bits (58), Expect = 0.27
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
 Frame = -3

Query: 370 LWKLPTIAFVLSLFAS----FANKAPVFFIIAAICDALPPGAAHISNILSFS*GAKAITG 203
           LWK+P+++  LSLF +        A + F++    D +    A ++N + F  G  A+  
Sbjct: 148 LWKMPSLSEFLSLFGTETCPAIGSAILIFVVLPELDVVK--GAMLTNAVCFVPGVVAMFS 205

Query: 202 KKLEAPCKI 176
           +K   PC I
Sbjct: 206 RK---PCSI 211


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 27.5 bits (58), Expect = 0.27
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
 Frame = -3

Query: 370 LWKLPTIAFVLSLFAS----FANKAPVFFIIAAICDALPPGAAHISNILSFS*GAKAITG 203
           LWK+P+++  LSLF +        A + F++    D +    A ++N + F  G  A+  
Sbjct: 148 LWKMPSLSEFLSLFGTETCPAIGSAILIFVVLPELDVVK--GAMLTNAVCFVPGVVAMFS 205

Query: 202 KKLEAPCKI 176
           +K   PC I
Sbjct: 206 RK---PCSI 211


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +3

Query: 261 PGGKASHIAAIMKNTGALFANDANKERTKAIVGNFHRLGVVNTVICNYDGRQ 416
           PGG +SH++A++       A  + KE +  +V N H    +   I    GR+
Sbjct: 537 PGGPSSHVSAVLTCKVCDQAFSSLKELSNHMVKNSHYKEHIMRSITESGGRR 588


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 289,065
Number of Sequences: 336
Number of extensions: 6040
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 44350025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)