Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_A08_e537_02.seq
         (1482 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6015| Best HMM Match : Nol1_Nop2_Fmu (HMM E-Value=1.2e-07)         233   4e-61
SB_21085| Best HMM Match : Nol1_Nop2_Fmu (HMM E-Value=2.1e-07)        206   3e-53
SB_41998| Best HMM Match : Nol1_Nop2_Fmu (HMM E-Value=3.2e-16)        206   3e-53
SB_57727| Best HMM Match : Nitro_FeMo-Co (HMM E-Value=6.4)             42   0.001
SB_36364| Best HMM Match : Ion_trans (HMM E-Value=0.82)                32   1.0  
SB_56440| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.4  
SB_27755| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   3.1  
SB_29298| Best HMM Match : GFO_IDH_MocA_C (HMM E-Value=2.3e-06)        31   3.1  
SB_51788| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.2  
SB_27756| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.2  

>SB_6015| Best HMM Match : Nol1_Nop2_Fmu (HMM E-Value=1.2e-07)
          Length = 286

 Score =  233 bits (569), Expect = 4e-61
 Identities = 106/143 (74%), Positives = 123/143 (86%)
 Frame = +3

Query: 426 VIKGFDRVLLDAPCTGTGVIAKDPSVKTTKDQKDIQRCFNLQRQLLLAAIDCCNAKSSTG 605
           V+ GFDR LLDAPC+GTGVI+KDPSVKT K +KDI RC ++Q++L+LAAID  +AKS TG
Sbjct: 1   VMGGFDRTLLDAPCSGTGVISKDPSVKTNKTEKDILRCSHVQKELILAAIDSVDAKSPTG 60

Query: 606 SYIVYSTCSILPEENEWVVNYALKRRNVKLVPTGLDFGTEGFVKYRHHRFHPSLKLTRRF 785
            YIVYSTCSI+ EE+EWVV+YAL +R+VKLVPTGLDFG EGF K+R   FHPSLKLTRRF
Sbjct: 61  GYIVYSTCSIMVEEDEWVVDYALSKRHVKLVPTGLDFGREGFSKFRGRHFHPSLKLTRRF 120

Query: 786 YPHTHNMDGFFVAKLRKFSNVIP 854
           Y H HNMDGFFVAKL+KFSN IP
Sbjct: 121 YAHAHNMDGFFVAKLKKFSNKIP 143


>SB_21085| Best HMM Match : Nol1_Nop2_Fmu (HMM E-Value=2.1e-07)
          Length = 219

 Score =  206 bits (503), Expect = 3e-53
 Identities = 91/114 (79%), Positives = 103/114 (90%)
 Frame = +3

Query: 81  LDPVGKWSKVGLVVYSSTVPIGATPEYLAGHYILQGASSFLPVMALAPQENERILDMCAA 260
           LDPVGKWSKVGLVVY S+VPIGATPEYLAGHY++QG+SS LPVMALAPQE ER+LDMCAA
Sbjct: 105 LDPVGKWSKVGLVVYDSSVPIGATPEYLAGHYMIQGSSSMLPVMALAPQEKERVLDMCAA 164

Query: 261 PGGKASHIAAIMKNTGALFANDANKERTKAIVGNFHRLGVVNTVICNYDGRQFP 422
           PGGK +++AA+MKNTG + ANDA KERTKA+V N HRLGV NTV+CNYDGR FP
Sbjct: 165 PGGKTTYLAALMKNTGIVVANDAKKERTKALVANIHRLGVTNTVVCNYDGRAFP 218


>SB_41998| Best HMM Match : Nol1_Nop2_Fmu (HMM E-Value=3.2e-16)
          Length = 467

 Score =  206 bits (503), Expect = 3e-53
 Identities = 91/114 (79%), Positives = 103/114 (90%)
 Frame = +3

Query: 81  LDPVGKWSKVGLVVYSSTVPIGATPEYLAGHYILQGASSFLPVMALAPQENERILDMCAA 260
           LDPVGKWSKVGLVVY S+VPIGATPEYLAGHY++QG+SS LPVMALAPQE ER+LDMCAA
Sbjct: 353 LDPVGKWSKVGLVVYDSSVPIGATPEYLAGHYMIQGSSSMLPVMALAPQEKERVLDMCAA 412

Query: 261 PGGKASHIAAIMKNTGALFANDANKERTKAIVGNFHRLGVVNTVICNYDGRQFP 422
           PGGK +++AA+MKNTG + ANDA KERTKA+V N HRLGV NTV+CNYDGR FP
Sbjct: 413 PGGKTTYLAALMKNTGIVVANDAKKERTKALVANIHRLGVTNTVVCNYDGRAFP 466


>SB_57727| Best HMM Match : Nitro_FeMo-Co (HMM E-Value=6.4)
          Length = 139

 Score = 41.9 bits (94), Expect = 0.001
 Identities = 22/82 (26%), Positives = 45/82 (54%)
 Frame = +3

Query: 432 KGFDRVLLDAPCTGTGVIAKDPSVKTTKDQKDIQRCFNLQRQLLLAAIDCCNAKSSTGSY 611
           +  + +++D  C+G+G+I++   + + + + D+Q+         L+ +    +  +    
Sbjct: 31  RNVEYIVVDPSCSGSGIISRLDGLVSDEQEDDLQQRLESLADFQLSVLTHAFSFPAVKK- 89

Query: 612 IVYSTCSILPEENEWVVNYALK 677
           + YSTCSI  +ENE VV+ ALK
Sbjct: 90  VAYSTCSIHSQENEDVVHKALK 111


>SB_36364| Best HMM Match : Ion_trans (HMM E-Value=0.82)
          Length = 318

 Score = 32.3 bits (70), Expect = 1.0
 Identities = 17/58 (29%), Positives = 31/58 (53%)
 Frame = -3

Query: 400 LHITVLTTPNLWKLPTIAFVLSLFASFANKAPVFFIIAAICDALPPGAAHISNILSFS 227
           L++T+ T   +WK+  +AF +  F ++ N   +F +  +  D +   AA  S+  SFS
Sbjct: 34  LYVTLYTMETIWKI--VAFRIYYFKAYWNLLDLFIVALSFIDIIIDQAASSSDDTSFS 89


>SB_56440| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1142

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 405 DGRQFPDVIKGFDRVLLDAPCTGT 476
           DGR F D  +G++ ++ D  CTGT
Sbjct: 711 DGRMFNDTSEGYNAMITDVDCTGT 734


>SB_27755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 83

 Score = 30.7 bits (66), Expect = 3.1
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = -3

Query: 292 IAAICDALPPGAAHISNI 239
           I+ ICD L PGAAH+S I
Sbjct: 66  ISMICDVLDPGAAHVSRI 83


>SB_29298| Best HMM Match : GFO_IDH_MocA_C (HMM E-Value=2.3e-06)
          Length = 805

 Score = 30.7 bits (66), Expect = 3.1
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 432 KGFDRVLLDAPCTGTGVIAKDPSVKTTKDQKDIQRCFNLQRQL 560
           + FDR+LLDAPC+  G   + P        K++Q    LQR++
Sbjct: 349 EAFDRILLDAPCSALG---QRPQSVVHMKLKELQSFPKLQRKI 388



 Score = 29.9 bits (64), Expect = 5.4
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +3

Query: 180 LQGASSFLPVMALAPQENERILDMCAAP 263
           LQ   S +    L PQ  E +LDMCAAP
Sbjct: 310 LQNLPSAVVGHILGPQSGESVLDMCAAP 337


>SB_51788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 414

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
 Frame = +3

Query: 138 PIGATPEYLAGHYILQGA----SSFLPVMAL-APQENERILDMCAAPGGKASHIAAIMKN 302
           PI   PE +  H  L+ A    S F P   + AP+ +++  + C     +A+H +A +K+
Sbjct: 222 PINRRPEAVVIHNYLREAFLQRSGFPPPTRMQAPKPSKKNTNTCTDLDPEAAHRSAWVKS 281

Query: 303 TGALFANDA 329
           T  LF N A
Sbjct: 282 TKDLFLNKA 290


>SB_27756| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 520

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +3

Query: 603 GSYIVYSTCSILPEENEWVVNYALK 677
           G  IVYSTC++ P ENE VV   L+
Sbjct: 37  GGRIVYSTCTMSPIENESVVAEMLR 61


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,585,443
Number of Sequences: 59808
Number of extensions: 739166
Number of successful extensions: 1688
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1684
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4789013016
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)