Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_A08_e537_02.seq
         (1482 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106576-1|AAC78177.2|  664|Caenorhabditis elegans Hypothetical ...   372   e-103
AL132949-37|CAB70100.3|  285|Caenorhabditis elegans Hypothetical...    85   9e-17
AL132949-4|CAB70101.2|  439|Caenorhabditis elegans Hypothetical ...    85   9e-17
AC025721-9|AAK29904.3|  639|Caenorhabditis elegans Hypothetical ...    75   1e-13
AC025716-7|AAK95888.1|  465|Caenorhabditis elegans Hypothetical ...    65   1e-10

>AF106576-1|AAC78177.2|  664|Caenorhabditis elegans Hypothetical
            protein W07E6.1 protein.
          Length = 664

 Score =  372 bits (916), Expect = e-103
 Identities = 164/256 (64%), Positives = 208/256 (81%), Gaps = 1/256 (0%)
 Frame = +3

Query: 81   LDPVGKWSKVGLVVYSSTVPIGATPEYLAGHYILQGASSFLPVMALAPQENERILDMCAA 260
            +DP   W+KVGLVVY S VP+GATPEYLAGHY++QG +S LPVMALAPQ  +R+LDMC+A
Sbjct: 256  VDPAADWTKVGLVVYDSQVPVGATPEYLAGHYMIQGLNSLLPVMALAPQPGDRVLDMCSA 315

Query: 261  PGGKASHIAAIMKNTGALFANDANKERTKAIVGNFHRLGVVNTVICNYDGRQFPDVI-KG 437
            PGGK SHIAA+MKN+G LFANDAN  R +AI+GN HRLGV NTV+CN  G +F  +   G
Sbjct: 316  PGGKTSHIAALMKNSGVLFANDANFTRCRAIIGNLHRLGVNNTVVCNLGGEEFSKIRPNG 375

Query: 438  FDRVLLDAPCTGTGVIAKDPSVKTTKDQKDIQRCFNLQRQLLLAAIDCCNAKSSTGSYIV 617
            FDR+LLDAPC+GTGVI KD SVKT+KD +D+QR   +QRQL+L+A+D  +A S  G Y+V
Sbjct: 376  FDRILLDAPCSGTGVIWKDQSVKTSKDSQDVQRRHTMQRQLILSALDSLDANSPNGGYLV 435

Query: 618  YSTCSILPEENEWVVNYALKRRNVKLVPTGLDFGTEGFVKYRHHRFHPSLKLTRRFYPHT 797
            YSTCS+L EENE VVN+ L+RR+ +LVPTGL  G +G+ ++R +RFHPSL +T+R+YPH 
Sbjct: 436  YSTCSVLVEENEAVVNFLLERRHCELVPTGLSIGVDGYTRFRDYRFHPSLSMTKRYYPHV 495

Query: 798  HNMDGFFVAKLRKFSN 845
            HN+DGF+VAK++K SN
Sbjct: 496  HNIDGFYVAKIKKLSN 511


>AL132949-37|CAB70100.3|  285|Caenorhabditis elegans Hypothetical
           protein Y53F4B.4a protein.
          Length = 285

 Score = 85.4 bits (202), Expect = 9e-17
 Identities = 56/174 (32%), Positives = 94/174 (54%), Gaps = 6/174 (3%)
 Frame = +3

Query: 171 HYILQGASSFLPVMALAPQENERILDMCAAPGGKASHIAAIMKNTGALFAND--ANKERT 344
           + ILQ  +S LP   L P+   ++ D CAAPG K SH AAIM+N G ++A D  A++  T
Sbjct: 61  YLILQDKASCLPAFLLNPRPGSQVFDTCAAPGMKTSHAAAIMENQGKVWAMDRAADRVAT 120

Query: 345 KAIVGNFHRLGVVNTVICNYDGRQFPDVIKGFDRV---LLDAPCTGTGVIAKDPSVKTTK 515
              + +  ++ + ++   ++      D  K F +V   ++D PC+G+G++ +   +    
Sbjct: 121 MKQLLDASKVAIASSFCGDFLKTDVTD--KKFSKVKFAIVDPPCSGSGIVKRMDEITGGN 178

Query: 516 DQKD-IQRCFNLQRQLLLAAIDCCNAKSSTGSYIVYSTCSILPEENEWVVNYAL 674
            +K+ +++  NLQ  +L  A+     K +     VYSTCS+  EENE VV+  L
Sbjct: 179 AEKERLEKLKNLQAMILKHALKLPGLKRA-----VYSTCSVHEEENEQVVDEVL 227


>AL132949-4|CAB70101.2|  439|Caenorhabditis elegans Hypothetical
           protein Y53F4B.4b protein.
          Length = 439

 Score = 85.4 bits (202), Expect = 9e-17
 Identities = 56/174 (32%), Positives = 94/174 (54%), Gaps = 6/174 (3%)
 Frame = +3

Query: 171 HYILQGASSFLPVMALAPQENERILDMCAAPGGKASHIAAIMKNTGALFAND--ANKERT 344
           + ILQ  +S LP   L P+   ++ D CAAPG K SH AAIM+N G ++A D  A++  T
Sbjct: 215 YLILQDKASCLPAFLLNPRPGSQVFDTCAAPGMKTSHAAAIMENQGKVWAMDRAADRVAT 274

Query: 345 KAIVGNFHRLGVVNTVICNYDGRQFPDVIKGFDRV---LLDAPCTGTGVIAKDPSVKTTK 515
              + +  ++ + ++   ++      D  K F +V   ++D PC+G+G++ +   +    
Sbjct: 275 MKQLLDASKVAIASSFCGDFLKTDVTD--KKFSKVKFAIVDPPCSGSGIVKRMDEITGGN 332

Query: 516 DQKD-IQRCFNLQRQLLLAAIDCCNAKSSTGSYIVYSTCSILPEENEWVVNYAL 674
            +K+ +++  NLQ  +L  A+     K +     VYSTCS+  EENE VV+  L
Sbjct: 333 AEKERLEKLKNLQAMILKHALKLPGLKRA-----VYSTCSVHEEENEQVVDEVL 381


>AC025721-9|AAK29904.3|  639|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.5 protein.
          Length = 639

 Score = 74.9 bits (176), Expect = 1e-13
 Identities = 62/196 (31%), Positives = 93/196 (47%), Gaps = 17/196 (8%)
 Frame = +3

Query: 168 GHYILQGASSFLPVMALAPQENERILDMCAAPGGKASHIAAIMKNT-----GALFANDAN 332
           G+   Q A S +P + LAP     +LD+CAAPG K + +  ++        G + AND +
Sbjct: 149 GNLSRQEAVSMIPPLLLAPTSEHFVLDLCAAPGSKTTQLLEMIHENEENPKGMVIANDVD 208

Query: 333 KERTKAIVGNFHRLGVVNTVICNY---DGRQFPDV------IKGFDRVLLDAPCTGTGVI 485
            +R   ++   H L    T  C     D  +FP +      +  FDRVL D  C+G G +
Sbjct: 209 MKRCYMLI--HHTLKRFRTAACAVTCEDAARFPHISDSDGGLIQFDRVLADVICSGDGTL 266

Query: 486 AKDPSVKTTKDQKDIQRCFNLQR-QLLLAAIDCCNAKSSTGSYIVYSTCSILPEENEWVV 662
            K+P +      +D      L R Q+ +A       K   G  +VYSTCS+ P E+E VV
Sbjct: 267 RKNPEIWKKWTPQD---GLGLHRMQIAIARKGAQQLK--VGGRMVYSTCSMNPIEDEAVV 321

Query: 663 NYALK--RRNVKLVPT 704
              L+  + ++KLV T
Sbjct: 322 AQLLRDSKGSLKLVDT 337



 Score = 33.9 bits (74), Expect = 0.30
 Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 11/95 (11%)
 Frame = +3

Query: 591 KSSTGSYIVYSTCSILPE--ENEWVVNYALKRRNVKLVPTGLDFGTEGFVKYRHHRFHP- 761
           + S GS  +  T S+LPE      VV + +  R++KL  +  D   E   K       P 
Sbjct: 326 RDSKGSLKLVDTSSLLPELKRETGVVQWKVFDRDMKLYKSLEDISEEKMKKVIVSSLFPP 385

Query: 762 --------SLKLTRRFYPHTHNMDGFFVAKLRKFS 842
                   +L  T R  PH  +  GFFVA + K S
Sbjct: 386 TEQEAKEMNLHFTMRITPHAQDTGGFFVALIEKVS 420


>AC025716-7|AAK95888.1|  465|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.21 protein.
          Length = 465

 Score = 65.3 bits (152), Expect = 1e-10
 Identities = 54/177 (30%), Positives = 85/177 (48%), Gaps = 10/177 (5%)
 Frame = +3

Query: 174 YILQGASSFLPVMALAPQENERILDMCAAPGGKASHIAAIMKNTGALFAND---ANKERT 344
           Y L    S LPV+AL  Q+++ +LDMCAAPGGK S +AA+      +  ND   A   + 
Sbjct: 234 YWLLDGGSLLPVLALGLQKDDSLLDMCAAPGGK-SLLAALSNLPSKIVCNDFKLARLGQL 292

Query: 345 KAIVGNF---HRLGVVNTVICNYDGRQFP--DVIKGFDRVLLDAPCT--GTGVIAKDPSV 503
           K  +  +       +   V+   D       D  + +D+VL+D PC+     V   D ++
Sbjct: 293 KRALMTYVPEDSETIDKFVLKRKDASDVKTWDEFEAYDKVLVDVPCSTDRLSVSTDDGNL 352

Query: 504 KTTKDQKDIQRCFNLQRQLLLAAIDCCNAKSSTGSYIVYSTCSILPEENEWVVNYAL 674
            +T   +       LQ ++L+ A+         G  +VYSTC++ P +NE VV  A+
Sbjct: 353 FSTGSTQQRLDLPVLQTKILVNAL----RSVKVGGSVVYSTCTLSPSQNEAVVENAV 405


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,624,691
Number of Sequences: 27780
Number of extensions: 571282
Number of successful extensions: 1297
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1289
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4256331302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)