Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_A08_e537_02.seq
(1482 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g55920.1 68418.m06975 nucleolar protein, putative similar to ... 379 e-105
At4g26600.1 68417.m03834 nucleolar protein, putative similar to ... 374 e-103
At3g13180.1 68416.m01649 NOL1/NOP2/sun family protein / antiterm... 105 6e-23
At5g26180.2 68418.m03115 NOL1/NOP2/sun family protein similar to... 81 2e-15
At5g26180.1 68418.m03114 NOL1/NOP2/sun family protein similar to... 81 2e-15
At2g22400.1 68415.m02656 NOL1/NOP2/sun family protein contains P... 73 4e-13
At4g40000.1 68417.m05664 NOL1/NOP2/sun family protein contains P... 71 3e-12
At1g06560.1 68414.m00695 NOL1/NOP2/sun family protein contains P... 61 2e-09
At4g17590.1 68417.m02631 nucleolar protein-related contains weak... 41 0.002
At5g66180.1 68418.m08337 expressed protein 30 4.5
>At5g55920.1 68418.m06975 nucleolar protein, putative similar to
SP|P46087 Proliferating-cell nucleolar antigen p120
(Proliferation-associated nucleolar protein p120) {Homo
sapiens}, SP|P40991 Nucleolar protein NOP2 {Saccharomyces
cerevisiae}; contains Pfam profile PF01189: NOL1/NOP2/sun
family
Length = 682
Score = 379 bits (932), Expect = e-105
Identities = 175/267 (65%), Positives = 213/267 (79%), Gaps = 2/267 (0%)
Frame = +3
Query: 81 LDPVGKWSKVGLVVYSSTVPIGATPEYLAGHYILQGASSFLPVMALAPQENERILDMCAA 260
LDP+ KWSKVGLV+Y S VPIGATPEYLAG+Y+LQGASSFLPVMALAP+ENERI+D+ AA
Sbjct: 310 LDPLSKWSKVGLVIYDSQVPIGATPEYLAGYYMLQGASSFLPVMALAPRENERIVDVAAA 369
Query: 261 PGGKASHIAAIMKNTGALFANDANKERTKAIVGNFHRLGVVNTVICNYDGRQFPDVI--K 434
PGGK ++IAA+MKNTG ++AN+ R K++ N HR+GV NT++CNYDGR+ P V+
Sbjct: 370 PGGKTTYIAALMKNTGLIYANEMKVPRLKSLTANLHRMGVTNTIVCNYDGRELPKVLGQN 429
Query: 435 GFDRVLLDAPCTGTGVIAKDPSVKTTKDQKDIQRCFNLQRQLLLAAIDCCNAKSSTGSYI 614
DRVLLDAPC+GTG+I+KD SVK TK +I++ +LQ+QLLLAAID +A S TG YI
Sbjct: 430 TVDRVLLDAPCSGTGIISKDESVKITKTMDEIKKFAHLQKQLLLAAIDMVDANSKTGGYI 489
Query: 615 VYSTCSILPEENEWVVNYALKRRNVKLVPTGLDFGTEGFVKYRHHRFHPSLKLTRRFYPH 794
VYSTCSI+ ENE V++YALK+R+VKLV GLDFG +GF ++R HRF PSL TRRFYPH
Sbjct: 490 VYSTCSIMVTENEAVIDYALKKRDVKLVTCGLDFGRKGFTRFREHRFQPSLDKTRRFYPH 549
Query: 795 THNMDGFFVAKLRKFSNVIPXPVXDDD 875
HNMDGFFVAKL+K SNV DD
Sbjct: 550 VHNMDGFFVAKLKKMSNVKQSSEEGDD 576
>At4g26600.1 68417.m03834 nucleolar protein, putative similar to
SP|P46087 Proliferating-cell nucleolar antigen p120
(Proliferation-associated nucleolar protein p120) {Homo
sapiens}; contains Pfam profile PF01189: NOL1/NOP2/sun
family
Length = 671
Score = 374 bits (919), Expect = e-103
Identities = 175/284 (61%), Positives = 216/284 (76%), Gaps = 5/284 (1%)
Frame = +3
Query: 81 LDPVGKWSKVGLVVYSSTVPIGATPEYLAGHYILQGASSFLPVMALAPQENERILDMCAA 260
LDP+ KWSKVGL+VY S VPIGATPEYLAG Y+LQ ASSFLPVMALAP+E ER++DM AA
Sbjct: 293 LDPLSKWSKVGLIVYDSQVPIGATPEYLAGFYMLQSASSFLPVMALAPREKERVVDMAAA 352
Query: 261 PGGKASHIAAIMKNTGALFANDANKERTKAIVGNFHRLGVVNTVICNYDGRQFPDVI--K 434
PGGK +++AA+MKNTG ++AN+ R K++ N HR+GV NT++CNYDGR+ V+
Sbjct: 353 PGGKTTYVAALMKNTGIIYANEMKVPRLKSLSANLHRMGVTNTIVCNYDGRELTKVLGQS 412
Query: 435 GFDRVLLDAPCTGTGVIAKDPSVKTTKDQKDIQRCFNLQRQLLLAAIDCCNAKSSTGSYI 614
DRVLLDAPC+GTGVI+KD SVKT+K DI++ +LQ+QL+L AID +A S TG YI
Sbjct: 413 SVDRVLLDAPCSGTGVISKDESVKTSKSADDIKKFAHLQKQLILGAIDLVDANSKTGGYI 472
Query: 615 VYSTCSILPEENEWVVNYALKRRNVKLVPTGLDFGTEGFVKYRHHRFHPSLKLTRRFYPH 794
VYSTCS++ ENE V++YALK R+VKLVP GLDFG GF +R HRFHPSL+ TRRFYPH
Sbjct: 473 VYSTCSVMIPENEAVIDYALKNRDVKLVPCGLDFGRPGFSSFREHRFHPSLEKTRRFYPH 532
Query: 795 THNMDGFFVAKLRKFSNVIPXPVXDDDX---EEIEGKPSDKVDE 917
HNMDGFFVAKL+K SN + D+ E+ + SD DE
Sbjct: 533 VHNMDGFFVAKLKKMSNAMQPSGNDEPAVTMEQAQVSSSDDDDE 576
>At3g13180.1 68416.m01649 NOL1/NOP2/sun family protein /
antitermination NusB domain-containing protein low
similarity to SP|P36929 SUN protein (FMU protein)
{Escherichia coli}; contains Pfam profiles PF01189:
NOL1/NOP2/sun family, PF01029: NusB family
Length = 523
Score = 105 bits (253), Expect = 6e-23
Identities = 76/221 (34%), Positives = 113/221 (51%), Gaps = 4/221 (1%)
Frame = +3
Query: 180 LQGASSFLPVMALAPQENERILDMCAAPGGKASHIAAIMKNTGALFANDANKERTKAI-- 353
+Q S+ L V + PQ ERI+D CAAPGGK +A+ +K G ++A D N+ R + +
Sbjct: 314 VQDESAGLIVSVVKPQPGERIMDACAAPGGKTLFMASCLKGQGMIYAMDVNEGRLRILGE 373
Query: 354 VGNFHRL-GVVNTVICNYDGRQFPDVIK-GFDRVLLDAPCTGTGVIAKDPSVKTTKDQKD 527
H++ G++ T+ + D R F + + +D+VLLDAPC+G GV++K ++ + +D
Sbjct: 374 TAKSHQVDGLITTI--HSDLRVFAETNEVQYDKVLLDAPCSGLGVLSKRADLRWNRKLED 431
Query: 528 IQRCFNLQRQLLLAAIDCCNAKSSTGSYIVYSTCSILPEENEWVVNYALKRRNVKLVPTG 707
+ LQ +LL D + G +VYSTCSI PEENE V L R +
Sbjct: 432 MLELTKLQDELL----DSASKLVKHGGVLVYSTCSIDPEENEGRVEAFLLRHPEFTIDPV 487
Query: 708 LDFGTEGFVKYRHHRFHPSLKLTRRFYPHTHNMDGFFVAKL 830
F FV F S P H++DG F A+L
Sbjct: 488 TSFVPSSFV--TSQGFFLS-------NPVKHSLDGAFAARL 519
>At5g26180.2 68418.m03115 NOL1/NOP2/sun family protein similar to
NOL1R [Homo sapiens] GI:16226071; contains Pfam profile
PF01189: NOL1/NOP2/sun family
Length = 567
Score = 81.0 bits (191), Expect = 2e-15
Identities = 58/177 (32%), Positives = 81/177 (45%), Gaps = 8/177 (4%)
Frame = +3
Query: 168 GHYILQGASSFLPVMALAPQENERILDMCAAPGGKASHIAAIMKNTGALFANDANKERTK 347
G LQG +S + AL PQ +LD C+APG K H+AA+M+ G + A + N+ER K
Sbjct: 284 GRIFLQGKASSMVAAALQPQAGWEVLDACSAPGNKTIHLAALMEGQGKIIACELNEERVK 343
Query: 348 AIVGNFHRLGVVNTVICNYD----GRQFPDVIKGFDRVLLDAPCTGTGVIAKDPSVKTTK 515
+ G N +C+ D + P K +LLD C+G+G I
Sbjct: 344 RLEHTIKLSGASNIEVCHGDFLGLNPKDPSFAK-IRAILLDPSCSGSGTITDRLDHLLPS 402
Query: 516 DQKDIQRCFNLQRQLLLAAID---CCNAKS-STGSYIVYSTCSILPEENEWVVNYAL 674
+D ++ R LA +A S +VYSTCSI ENE VV+ L
Sbjct: 403 HSEDNNMNYDSMRLHKLAVFQKKALAHALSFPKVERVVYSTCSIYQIENEDVVSSVL 459
>At5g26180.1 68418.m03114 NOL1/NOP2/sun family protein similar to
NOL1R [Homo sapiens] GI:16226071; contains Pfam profile
PF01189: NOL1/NOP2/sun family
Length = 567
Score = 81.0 bits (191), Expect = 2e-15
Identities = 58/177 (32%), Positives = 81/177 (45%), Gaps = 8/177 (4%)
Frame = +3
Query: 168 GHYILQGASSFLPVMALAPQENERILDMCAAPGGKASHIAAIMKNTGALFANDANKERTK 347
G LQG +S + AL PQ +LD C+APG K H+AA+M+ G + A + N+ER K
Sbjct: 284 GRIFLQGKASSMVAAALQPQAGWEVLDACSAPGNKTIHLAALMEGQGKIIACELNEERVK 343
Query: 348 AIVGNFHRLGVVNTVICNYD----GRQFPDVIKGFDRVLLDAPCTGTGVIAKDPSVKTTK 515
+ G N +C+ D + P K +LLD C+G+G I
Sbjct: 344 RLEHTIKLSGASNIEVCHGDFLGLNPKDPSFAK-IRAILLDPSCSGSGTITDRLDHLLPS 402
Query: 516 DQKDIQRCFNLQRQLLLAAID---CCNAKS-STGSYIVYSTCSILPEENEWVVNYAL 674
+D ++ R LA +A S +VYSTCSI ENE VV+ L
Sbjct: 403 HSEDNNMNYDSMRLHKLAVFQKKALAHALSFPKVERVVYSTCSIYQIENEDVVSSVL 459
>At2g22400.1 68415.m02656 NOL1/NOP2/sun family protein contains Pfam
profile PF01189: NOL1/NOP2/sun family
Length = 808
Score = 73.3 bits (172), Expect = 4e-13
Identities = 58/198 (29%), Positives = 89/198 (44%), Gaps = 27/198 (13%)
Frame = +3
Query: 168 GHYILQGASSFLPVMALAPQENERILDMCAAPGGKASHIAAIMKNT--------GALFAN 323
G+ Q A S +P + L + +LDMCAAPG K + I+ G + AN
Sbjct: 165 GNITRQEAVSMVPPLFLDVHPDHFVLDMCAAPGSKTFQLLEIIHEASEPGSLPNGLVVAN 224
Query: 324 DANKERTKAIVGNFHRLGVVNTVICNYDGRQFPDV--------IKG-----------FDR 446
D + +R+ ++ R+ N ++ N++G+QFP KG FDR
Sbjct: 225 DVDFKRSNLLIHQTKRMCTSNLIVTNHEGQQFPGCRLNKSRASEKGISENMPINQLAFDR 284
Query: 447 VLLDAPCTGTGVIAKDPSVKTTKDQKDIQRCFNLQRQLLLAAIDCCNAKSSTGSYIVYST 626
VL D PC+G G + K P + + +LQ L + + G ++YST
Sbjct: 285 VLCDVPCSGDGTLRKAPDIWRKWNSGMGNGLHSLQIILAMRGLSLL----KVGGKMIYST 340
Query: 627 CSILPEENEWVVNYALKR 680
CS+ P E+E VV L+R
Sbjct: 341 CSMNPVEDEAVVAEILRR 358
>At4g40000.1 68417.m05664 NOL1/NOP2/sun family protein contains Pfam
profile PF01189: NOL1/NOP2/sun family
Length = 783
Score = 70.5 bits (165), Expect = 3e-12
Identities = 56/198 (28%), Positives = 86/198 (43%), Gaps = 26/198 (13%)
Frame = +3
Query: 165 AGHYILQGASSFLPVMALAPQENERILDMCAAPGGKASHIAAIMKNT--------GALFA 320
AG+ Q + S +P + L + +LDMCAAPG K + I+ + G + A
Sbjct: 157 AGNMTRQESVSMVPPLFLDVHPDHFVLDMCAAPGSKTFQLLEIIHESSEPGSLPNGMVVA 216
Query: 321 NDANKERTKAIVGNFHRLGVVNTVICNYDGRQFPDVIKG------------------FDR 446
ND + +R+ ++ R N ++ N +G+ FP FDR
Sbjct: 217 NDVDYKRSNLLIHQTKRTCTTNLMVTNNEGQHFPSCNTKRTLSVASETNPHPIDQLLFDR 276
Query: 447 VLLDAPCTGTGVIAKDPSVKTTKDQKDIQRCFNLQRQLLLAAIDCCNAKSSTGSYIVYST 626
VL D PC+G G + K P + + +LQ L + + G +VYST
Sbjct: 277 VLCDVPCSGDGTLRKAPDIWRRWNSGSGNGLHSLQVVLAMRGLSLL----KVGGRMVYST 332
Query: 627 CSILPEENEWVVNYALKR 680
CS+ P E+E VV L+R
Sbjct: 333 CSMNPIEDEAVVAEILRR 350
Score = 29.9 bits (64), Expect = 4.5
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 765 LKLTRRFYPHTHNMDGFFVAKLRKFS 842
L+L R PH N GFF+A L K S
Sbjct: 440 LELCMRILPHDQNTGGFFIAVLHKVS 465
>At1g06560.1 68414.m00695 NOL1/NOP2/sun family protein contains Pfam
profile PF01189: NOL1/NOP2/sun family
Length = 599
Score = 61.3 bits (142), Expect = 2e-09
Identities = 31/82 (37%), Positives = 41/82 (50%)
Frame = +3
Query: 162 LAGHYILQGASSFLPVMALAPQENERILDMCAAPGGKASHIAAIMKNTGALFANDANKER 341
L G LQ S + AL PQ+ ERILDMCAAPGGK + IA +M + G + A D + +
Sbjct: 274 LEGEIFLQNLPSIIVAHALDPQKGERILDMCAAPGGKTTAIAILMNDEGEIVAADRSHNK 333
Query: 342 TKAIVGNFHRLGVVNTVICNYD 407
+ +G C D
Sbjct: 334 VLVVQNLSAEMGFTCITTCKLD 355
Score = 53.6 bits (123), Expect = 3e-07
Identities = 48/140 (34%), Positives = 66/140 (47%), Gaps = 10/140 (7%)
Frame = +3
Query: 438 FDRVLLDAPCTGTGVIAKDPSVKTTKDQKDIQRCFNLQRQLLLAAIDCCNAKSSTGSYIV 617
FDRVLLDAPC+ G+ + + ++ QR++L A+ G +V
Sbjct: 459 FDRVLLDAPCSALGL--RPRLFAGLETVVSLRNHGWYQRKMLDQAVQLVRV----GGILV 512
Query: 618 YSTCSILPEENEWVVNYAL-KRRNVKLVPTGLDFGTEGFV-------KYRHHRFHP-SLK 770
YSTC+I P ENE VV YAL K R + L P G G V Y P +
Sbjct: 513 YSTCTINPSENEAVVRYALDKYRFLSLAPQHPRIGGPGLVGRCEFPDGYIEEWLKPGEEE 572
Query: 771 LTRRFYPHTH-NMDGFFVAK 827
L ++F P + + GFF+AK
Sbjct: 573 LVQKFDPSSELDTIGFFIAK 592
>At4g17590.1 68417.m02631 nucleolar protein-related contains weak
similarity to Swiss-Prot:P40991 nucleolar protein NOP2
[Saccharomyces cerevisiae]
Length = 109
Score = 40.7 bits (91), Expect = 0.002
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = +3
Query: 264 GGKASHIAA-IMKNTGALFANDANKERTKAIVGNFHRLGVVNTVICNY--DGRQFPDVIK 434
G H++ M G +FAN + + ++ N HR+G+ NTV+ NY + + FP +K
Sbjct: 40 GETPEHLSGRFMVIKGIIFANASTEHLLGSLYANLHRMGITNTVVSNYNINTKGFPYKLK 99
Query: 435 GF 440
G+
Sbjct: 100 GY 101
>At5g66180.1 68418.m08337 expressed protein
Length = 325
Score = 29.9 bits (64), Expect = 4.5
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +3
Query: 135 VPIGATPEYLAGHYILQGASSFLPVMALAPQENERILDMCAAPG 266
V I T Y G A+S V AL + +LD+CAAPG
Sbjct: 74 VHIARTKAYQQGMMYGIDAASGAAVSALGISPGDHVLDLCAAPG 117
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,885,214
Number of Sequences: 28952
Number of extensions: 516638
Number of successful extensions: 1122
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3942184128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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