Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_A07_e529_01.seq
         (1524 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    24   3.4  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    23   4.5  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   6.0  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    23   7.9  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 365 PRNPHPRTGSYRXHPLG 315
           P +P+P+ GS R  P+G
Sbjct: 385 PESPYPQIGSERATPVG 401


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 515 NQKRLKQFCEDRDIMITAYSPLGSPDRPWAKP 610
           NQK +K   ED +  +   + L S    W KP
Sbjct: 50  NQKCVKYLVEDEETSLATCNMLCSEPAIWPKP 81


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 320 LGRSHRLLCKPGASGS 273
           +G SHR  C  G SGS
Sbjct: 164 IGNSHRCHCSDGYSGS 179


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 22.6 bits (46), Expect = 7.9
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -1

Query: 585 DPSGEYAVIIISRSSQNCFNRFWFKXGW 502
           DPS +Y + +    + +C  +F    GW
Sbjct: 60  DPSADYCLFLEMTLAHHCRFKFSSSVGW 87


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,316
Number of Sequences: 336
Number of extensions: 4381
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 45783975
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)