Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_A05_e513_01.seq
         (1562 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia nu...    89   3e-16
UniRef50_UPI0000E4800E Cluster: PREDICTED: similar to protein F2...    43   0.025
UniRef50_UPI000023DFF5 Cluster: hypothetical protein FG09414.1; ...    38   0.95 
UniRef50_UPI0000DA21AD Cluster: PREDICTED: hypothetical protein;...    34   8.8  
UniRef50_Q10126 Cluster: Uncharacterized protein F52C9.6; n=7; C...    34   8.8  

>UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia
           nubilalis|Rep: Reverse transcriptase - Ostrinia
           nubilalis (European corn borer)
          Length = 497

 Score = 89.0 bits (211), Expect = 3e-16
 Identities = 40/68 (58%), Positives = 49/68 (72%)
 Frame = +2

Query: 485 LMRKTNARWVQRVLE*LPFNGRGNVGRPLKRWTNDLVKDAGIRWMQVTQDRSLWRPLGDI 664
           + R+ + RW ++VLE  P  GR +VGRP  RWT+DLVK AG  WMQ  QDRSLW+ LG+ 
Sbjct: 429 IARRADGRWGRKVLEWRPRAGRRSVGRPPTRWTDDLVKVAGSTWMQAAQDRSLWKSLGEA 488

Query: 665 *VQQWTSF 688
            VQQWTSF
Sbjct: 489 FVQQWTSF 496



 Score = 34.3 bits (75), Expect = 8.8
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = +1

Query: 313 KLKWQWAGHIDRRTD 357
           K+KWQWAGHI RR D
Sbjct: 420 KIKWQWAGHIARRAD 434


>UniRef50_UPI0000E4800E Cluster: PREDICTED: similar to protein
           F28E10.3 [imported] - Caenorhabditis elegans; n=4;
           Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
           protein F28E10.3 [imported] - Caenorhabditis elegans -
           Strongylocentrotus purpuratus
          Length = 824

 Score = 42.7 bits (96), Expect = 0.025
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +2

Query: 485 LMRKTNARWVQRVLE*LPFNGRGNVGRPLKRWTNDLVKDAG-IRWMQVTQDRSLWRPLGD 661
           + R+ + RW   +    P+ G+ N GR  KRW ++L +  G   W Q   +R +W    +
Sbjct: 368 ISRRNDNRWSSAITHWTPYEGKRNRGRQRKRWRDELQQFWGQTNWHQQALNRGIWNHHAE 427

Query: 662 I*VQQW 679
             + QW
Sbjct: 428 AFILQW 433


>UniRef50_UPI000023DFF5 Cluster: hypothetical protein FG09414.1;
           n=1; Gibberella zeae PH-1|Rep: hypothetical protein
           FG09414.1 - Gibberella zeae PH-1
          Length = 553

 Score = 37.5 bits (83), Expect = 0.95
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = +1

Query: 277 KNQNNRHYPKNGKLKWQWAGHIDRRTDALRVLDAILDGQMITTL 408
           ++ NN   P NG++ W W+  + R    LR+ DA +DGQ +T L
Sbjct: 120 RDSNNSKAPNNGEINWPWSFELARGL-VLRLEDAKVDGQGVTKL 162


>UniRef50_UPI0000DA21AD Cluster: PREDICTED: hypothetical protein;
           n=1; Rattus norvegicus|Rep: PREDICTED: hypothetical
           protein - Rattus norvegicus
          Length = 240

 Score = 34.3 bits (75), Expect = 8.8
 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -1

Query: 695 STEKTSIAG-LRYPPMVSTTIGLASPASSGFPRPSPGRL-STS*GVYPRCLFR 543
           S ++   AG LR PP    T+    P     PRPSPGR    S  V+P C F+
Sbjct: 2   SRQRPPTAGSLRRPP-AGATLAAGPPGQPCSPRPSPGRARPRSFAVFPSCTFK 53


>UniRef50_Q10126 Cluster: Uncharacterized protein F52C9.6; n=7;
           Caenorhabditis elegans|Rep: Uncharacterized protein
           F52C9.6 - Caenorhabditis elegans
          Length = 279

 Score = 34.3 bits (75), Expect = 8.8
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
 Frame = +2

Query: 491 RKTNARWVQRVLE*LPFNGRGNVGRPLKRWTNDLVKDAGIR---------WMQVTQDRSL 643
           R+ + RW   + E  P+N +  VGR   RWT+ L K+   R         W  + +DR  
Sbjct: 208 RRKDGRWTTLMTEWRPWNWKRYVGRTPMRWTDSLRKEITTRDADGEVITPWSTIAKDRKE 267

Query: 644 W 646
           W
Sbjct: 268 W 268


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,165,025,118
Number of Sequences: 1657284
Number of extensions: 22171643
Number of successful extensions: 43181
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 41522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43170
length of database: 575,637,011
effective HSP length: 104
effective length of database: 403,279,475
effective search space used: 167764261600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)