Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_A05_e513_01.seq
         (1562 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0092 - 22323049-22323224,22323840-22323887,22323962-223240...    30   4.3  
01_01_0853 + 6658237-6658531,6658683-6658823,6658969-6659238,665...    30   5.7  

>05_05_0092 -
           22323049-22323224,22323840-22323887,22323962-22324016,
           22324260-22324360,22324457-22324518,22324683-22324881,
           22325107-22325254,22325331-22325377,22325928-22325995,
           22326428-22326542,22326657-22326816
          Length = 392

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +1

Query: 304 KNGKLKWQWAGHIDRRTDALRVLDAILDGQMITTLLVH*YEYCKITTC 447
           K+  +KW   GH+  R +A++ L A+L+G+  +   V    YC+   C
Sbjct: 147 KDDNIKWSDQGHLKCRVNAIKGLIALLNGETESENAV--LSYCEYLHC 192


>01_01_0853 +
           6658237-6658531,6658683-6658823,6658969-6659238,
           6659324-6659463,6659563-6659709,6660739-6661320
          Length = 524

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -2

Query: 670 DLDIPQWSPQRSVLRHLHPADSRVLHQV 587
           DL+  +WS Q S+L+H+H +  R+ H +
Sbjct: 361 DLNNMKWSLQTSLLKHVHVSTERLQHSI 388


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,854,401
Number of Sequences: 37544
Number of extensions: 677904
Number of successful extensions: 1294
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1294
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5046916980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)