Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_A05_e513_01.seq
         (1562 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    36   0.059
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    36   0.059
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    36   0.078
AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    36   0.078
AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical ...    33   0.73 

>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
            transcriptase protein.
          Length = 1066

 Score = 36.3 bits (80), Expect = 0.059
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
 Frame = +2

Query: 491  RKTNARWVQRVLE*LPFNGRGNVGRPLKRWTNDLVKDAGIR---------WMQVTQDRSL 643
            R+ + RW   + E  P+  +  VGRP  RWT+ L K+   R         W  + +DR  
Sbjct: 995  RRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVITPWSTIAKDRKQ 1054

Query: 644  W 646
            W
Sbjct: 1055 W 1055


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 36.3 bits (80), Expect = 0.059
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
 Frame = +2

Query: 491 RKTNARWVQRVLE*LPFNGRGNVGRPLKRWTNDLVKDAGIR---------WMQVTQDRSL 643
           R+ + RW   + E  P+  +  VGRP  RWT+ L K+   R         W  + +DR  
Sbjct: 734 RRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVITPWSTIAKDRKQ 793

Query: 644 W 646
           W
Sbjct: 794 W 794


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical protein
            F20B4.7 protein.
          Length = 891

 Score = 35.9 bits (79), Expect = 0.078
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
 Frame = +2

Query: 491  RKTNARWVQRVLE*LPFNGRGNVGRPLKRWTNDLVKDAGIR---------WMQVTQDRSL 643
            R+ + RW   + E  P+  +  VGRP  RWT+ L K+   R         W  + +DR  
Sbjct: 820  RRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVITPWSTIAKDRKE 879

Query: 644  W 646
            W
Sbjct: 880  W 880


>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 35.9 bits (79), Expect = 0.078
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
 Frame = +2

Query: 491 RKTNARWVQRVLE*LPFNGRGNVGRPLKRWTNDLVKDAGIR---------WMQVTQDRSL 643
           R+ + RW   + E  P+  +  VGRP  RWT+ L K+   R         W  + +DR  
Sbjct: 346 RRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVITPWSTIAKDRKE 405

Query: 644 W 646
           W
Sbjct: 406 W 406


>AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical
           protein Y51F10.8 protein.
          Length = 204

 Score = 32.7 bits (71), Expect = 0.73
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
 Frame = +2

Query: 491 RKTNARWVQRVLE*LPFNGRGNVGRPLKRWTNDLVKDAGIR---------WMQVTQDRSL 643
           R+T+ RW   + +  P + +  VGRP  RW + L K+   R         W    +DR  
Sbjct: 131 RRTDGRWTTLMNDWCPRDEKRPVGRPPMRWNDSLRKEVTTRDAFGQVKQLWSTQAKDRKA 190

Query: 644 WR 649
           W+
Sbjct: 191 WK 192


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,918,155
Number of Sequences: 27780
Number of extensions: 536698
Number of successful extensions: 964
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4514820630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)