Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_A05_e513_01.seq
         (1562 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59750.1 68416.m06666 receptor lectin kinase, putative simila...    30   3.6  
At3g62760.1 68416.m07050 glutathione S-transferase, putative Glu...    29   8.3  

>At3g59750.1 68416.m06666 receptor lectin kinase, putative similar
           to receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733
          Length = 626

 Score = 30.3 bits (65), Expect = 3.6
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = -2

Query: 340 YGLPTAT*VYHSSGNVCYFGSSTDLLIPDSITQRNSKHS---PLHFEKIPVK 194
           Y L ++T  Y+S+GN    GS+ D  I D+I     KHS     + E IP+K
Sbjct: 16  YTLSSST--YNSNGNWTLEGSAADNSIGDTILTNTKKHSCGQTFNNESIPIK 65


>At3g62760.1 68416.m07050 glutathione S-transferase, putative
           Glutathione transferase III(b) - Zea mays, EMBL:AJ010296
          Length = 219

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -2

Query: 625 HLHPADSRVLHQVVCPPLKGSTHVASSVK 539
           H +PA S V+HQ++  PL+G +  A+ V+
Sbjct: 107 HFNPAISAVIHQLIVVPLQGESPNAAIVE 135


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,639,885
Number of Sequences: 28952
Number of extensions: 523114
Number of successful extensions: 977
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4202426112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)