Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_A04_e505_02.seq
         (1418 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1230 - 9936226-9936706,9938145-9938200,9939145-9939233,994...    29   8.9  

>01_01_1230 -
           9936226-9936706,9938145-9938200,9939145-9939233,
           9940820-9940923,9943756-9943931,9945130-9945713,
           9947441-9947513
          Length = 520

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = -3

Query: 681 RTHYFQYPFKYNNQNVPNKMPSQLHNIKSNTRSKNKD*Y--ITNHDSFLDRKLPPR 520
           RT Y+ YPF Y +  +P +   Q +N+ +     N+D    I +   +L  K+PP+
Sbjct: 87  RTEYYAYPFIYADYQMPGQ--PQPYNLDNQFYQINRDHSFPIESRVQYLPFKMPPQ 140


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,745,503
Number of Sequences: 37544
Number of extensions: 411584
Number of successful extensions: 654
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4490015796
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)