Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_A04_e505_02.seq
         (1418 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    26   0.69 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   2.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.9  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    23   6.4  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    23   6.4  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    23   6.4  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    23   6.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   6.4  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   8.5  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   8.5  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 26.2 bits (55), Expect = 0.69
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = -3

Query: 696 NLFYNRTH-YFQYPFKYNNQNVPNKMPSQLHNIKSNTRSKNKD 571
           N  YN  H   ++  K +NQN         H+ KSN R  N D
Sbjct: 422 NNHYNHNHNQARHSSKSDNQNNNQHNDQAHHSSKSNNRHNNND 464


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 2.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 389 SPHSEVARTSRAAYFP 342
           S H EV+RTS A  FP
Sbjct: 715 SKHEEVSRTSTAGQFP 730


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 4.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 666  QYPFKYNNQNVPNKMPSQLHNIKS 595
            Q P +   Q  P  +PSQL NIK+
Sbjct: 1229 QQPSQQQTQQQPIILPSQLLNIKT 1252


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -3

Query: 696 NLFYNRTHYFQYPFKYNNQNVPNKMPSQLHNIK 598
           +L  N  H   Y + YNN N   K+   ++ I+
Sbjct: 84  SLSNNTIHNNNYKYNYNNNNYNKKLYYNINYIE 116


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -3

Query: 696 NLFYNRTHYFQYPFKYNNQNVPNKMPSQLHNIK 598
           +L  N  H   Y + YNN N   K+   ++ I+
Sbjct: 84  SLSNNTIHNNNYKYNYNNNNYNKKLYYNINYIE 116


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -3

Query: 696 NLFYNRTHYFQYPFKYNNQNVPNKMPSQLHNIK 598
           +L  N  H   Y + YNN N   K+   ++ I+
Sbjct: 84  SLSNNTIHNNNYKYNYNNNNYNKKLYYNINYIE 116


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -3

Query: 696 NLFYNRTHYFQYPFKYNNQNVPNKMPSQLHNIK 598
           +L  N  H   Y + YNN N   K+   ++ I+
Sbjct: 84  SLSNNTIHNNNYKYNYNNNNYNKKLYYNINYIE 116


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 221  VLKRNINSNTIDG 183
            V KRNIN+ T+DG
Sbjct: 1220 VYKRNINTYTLDG 1232


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 689 FTIEHIIFNTLLNTITKMYQIKCHHNYII 603
           F +  ++F+  L T TK+     HH YII
Sbjct: 19  FGVLFVLFS-FLRTRTKLQPTYFHHTYII 46


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 689 FTIEHIIFNTLLNTITKMYQIKCHHNYII 603
           F +  ++F+  L T TK+     HH YII
Sbjct: 19  FGVLFVLFS-FLRTRTKLQPTYFHHTYII 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 292,107
Number of Sequences: 438
Number of extensions: 5622
Number of successful extensions: 25
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 49465956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)