Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_A03_e497_01.seq
(1565 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 89 2e-18
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 59 1e-09
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 50 9e-07
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 46 2e-05
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 33 0.081
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 33 0.081
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 30 1.00
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 27 7.0
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak... 27 9.3
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 27 9.3
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 89.0 bits (211), Expect = 2e-18
Identities = 40/87 (45%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Frame = +1
Query: 112 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISR 291
RCY C GH AREC + CYNCN+TGH A C E +TCY C +GH+ R
Sbjct: 18 RCYNCGENGHQARECTKGS---ICYNCNQTGHKASECTE---PQQEKTCYACGTAGHLVR 71
Query: 292 NCPDGTK-----TCYVCGKPGHISRDC 357
+CP CY CG+ GHI+RDC
Sbjct: 72 DCPSSPNPRQGAECYKCGRVGHIARDC 98
Score = 86.6 bits (205), Expect = 8e-18
Identities = 39/106 (36%), Positives = 52/106 (49%), Gaps = 13/106 (12%)
Frame = +1
Query: 79 GLRATARXEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTC 258
G +A + CY CN TGH A EC + E +CY C GH+ R+CP C
Sbjct: 26 GHQARECTKGSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAEC 85
Query: 259 YNCNKSGHISRNC-PDGTKT------------CYVCGKPGHISRDC 357
Y C + GHI+R+C +G ++ CY CG GH +RDC
Sbjct: 86 YKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDC 131
Score = 85.8 bits (203), Expect = 1e-17
Identities = 41/94 (43%), Positives = 50/94 (53%), Gaps = 11/94 (11%)
Frame = +1
Query: 115 CYRCNGTGHIARECAQSPDE---PSCYNCNKTGHIARNC-----PEGGR---DNSNQTCY 261
CY C GH+ R+C SP+ CY C + GHIAR+C GGR SN CY
Sbjct: 60 CYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCY 119
Query: 262 NCNKSGHISRNCPDGTKTCYVCGKPGHISRDCDE 363
C GH +R+C G K CY CGK GH S +C +
Sbjct: 120 ACGSYGHQARDCTMGVK-CYSCGKIGHRSFECQQ 152
Score = 75.4 bits (177), Expect = 2e-14
Identities = 32/68 (47%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Frame = +1
Query: 175 PSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNC--PDGTKTCYVCGKPGHIS 348
P CYNC + GH AR C +G CYNCN++GH + C P KTCY CG GH+
Sbjct: 17 PRCYNCGENGHQARECTKGS------ICYNCNQTGHKASECTEPQQEKTCYACGTAGHLV 70
Query: 349 RDCDEERN 372
RDC N
Sbjct: 71 RDCPSSPN 78
Score = 59.3 bits (137), Expect = 1e-09
Identities = 25/61 (40%), Positives = 32/61 (52%)
Frame = +1
Query: 115 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRN 294
CY C GH AR+C CY+C K GH + C + + Q CY CN+ GHI+ N
Sbjct: 118 CYACGSYGHQARDCTMGV---KCYSCGKIGHRSFECQQA---SDGQLCYKCNQPGHIAVN 171
Query: 295 C 297
C
Sbjct: 172 C 172
Score = 50.8 bits (116), Expect = 5e-07
Identities = 19/37 (51%), Positives = 23/37 (62%)
Frame = +1
Query: 112 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 222
+CY C GH + EC Q+ D CY CN+ GHIA NC
Sbjct: 136 KCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNC 172
Score = 28.3 bits (60), Expect = 3.1
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = +1
Query: 76 RGLRATARXEADRCYRCNGTGHIAREC 156
R + CY+CN GHIA C
Sbjct: 146 RSFECQQASDGQLCYKCNQPGHIAVNC 172
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 59.3 bits (137), Expect = 1e-09
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 9/105 (8%)
Frame = +1
Query: 76 RGLRATARXEADR-CYRCNGTGHIARECAQSPDEPS-CYNCNKTGHIARNCPEGGRDNSN 249
R LR + D+ C+ C GHI ++C ++ D S C+ C H C + G
Sbjct: 65 RRLRRINQRNRDKFCFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKG-PLKF 123
Query: 250 QTCYNCNKSGHISRNCPDGTK-------TCYVCGKPGHISRDCDE 363
C+ C+++GH+S C K C C H+++DCD+
Sbjct: 124 AKCFICHENGHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQ 168
Score = 37.5 bits (83), Expect = 0.005
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +1
Query: 241 NSNQTCYNCNKSGHISRNCP---DGTKTCYVCGKPGHISRDCDEE 366
N ++ C+ C + GHI ++CP D C+ CG H C ++
Sbjct: 74 NRDKFCFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKK 118
Score = 35.9 bits (79), Expect = 0.015
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Frame = +1
Query: 55 GSAGNSARGLRATARXEADRCYRCNGTGHIARECAQSPD--EPS---CYNCNKTGHIARN 219
GS +S + +C+ C+ GH++ +C Q+P P C C+ H+A++
Sbjct: 106 GSKEHSLNACSKKGPLKFAKCFICHENGHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKD 165
Query: 220 CPEGGRDN 243
C + +D+
Sbjct: 166 CDQVNKDD 173
Score = 28.3 bits (60), Expect = 3.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 310 KTCYVCGKPGHISRDCDEERN 372
K C+ C + GHI +DC E ++
Sbjct: 77 KFCFACRQQGHIVQDCPEAKD 97
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 50.0 bits (114), Expect = 9e-07
Identities = 26/64 (40%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +1
Query: 181 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNK-SGHISRNCPDGTKTCYVCGKPGHISRDC 357
C+NC GHI+++CP + C C HIS CP TK C CG GHI+ C
Sbjct: 89 CHNCKGNGHISKDCP-------HVLCTTCGAIDDHISVRCP-WTKKCMNCGLLGHIAARC 140
Query: 358 DEER 369
E R
Sbjct: 141 SEPR 144
Score = 46.4 bits (105), Expect = 1e-05
Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Frame = +1
Query: 115 CYRCNGTGHIARECAQSPDEPSCYNCNK-TGHIARNCPEGGRDNSNQTCYNCNKSGHISR 291
C+ C G GHI+++C C C HI+ CP + C NC GHI+
Sbjct: 89 CHNCKGNGHISKDC----PHVLCTTCGAIDDHISVRCP------WTKKCMNCGLLGHIAA 138
Query: 292 NCPD----GTKTCYVCGKPGHISRDC 357
C + G + C C H S C
Sbjct: 139 RCSEPRKRGPRVCRTCHTDTHTSSTC 164
Score = 36.3 bits (80), Expect = 0.012
Identities = 22/84 (26%), Positives = 30/84 (35%), Gaps = 2/84 (2%)
Frame = +1
Query: 112 RCYRCNGTGHIARECAQSPDEPS--CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHI 285
+C C GHIA C++ C C+ H + CP R Y K +
Sbjct: 126 KCMNCGLLGHIAARCSEPRKRGPRVCRTCHTDTHTSSTCPLIWR-------YYVEKEHPV 178
Query: 286 SRNCPDGTKTCYVCGKPGHISRDC 357
+ + K CY C H DC
Sbjct: 179 RIDVSEVRKFCYNCASDEHFGDDC 202
Score = 35.9 bits (79), Expect = 0.015
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +1
Query: 232 GRDNSNQ-TCYNCNKSGHISRNCPDGTKTCYVCGK-PGHISRDC 357
G D S C+NC +GHIS++CP C CG HIS C
Sbjct: 80 GSDPSESIVCHNCKGNGHISKDCPH--VLCTTCGAIDDHISVRC 121
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 45.6 bits (103), Expect = 2e-05
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Frame = +1
Query: 235 RDNSNQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRDC 357
RD+ NQ C NC GH +CP+ C CG GHI+RDC
Sbjct: 304 RDDENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDC 349
Score = 45.6 bits (103), Expect = 2e-05
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +1
Query: 181 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCP 300
C NC GH +CPE N C +C GHI+R+CP
Sbjct: 311 CQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCP 350
Score = 27.1 bits (57), Expect = 7.0
Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Frame = +1
Query: 211 ARNCPEGGRD-NSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDCDEERN*HAPN 387
A + PEG D NQ +G + D + C CG GH DC E N H N
Sbjct: 278 AASVPEGQNDLKRNQLRQLATLNGTLR---DDENQVCQNCGNVGHRRFDCPERIN-HTMN 333
Score = 27.1 bits (57), Expect = 7.0
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +1
Query: 115 CYRCNGTGHIARECAQSPDEP 177
C C GHIAR+C +P
Sbjct: 336 CRHCGSIGHIARDCPVRDQQP 356
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 33.5 bits (73), Expect = 0.081
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 280 HISRNCPDGTKTCYVCGKPGHISRDC 357
H + CP TCY CGK H R+C
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 33.5 bits (73), Expect = 0.081
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 280 HISRNCPDGTKTCYVCGKPGHISRDC 357
H + CP TCY CGK H R+C
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 29.9 bits (64), Expect = 1.00
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +1
Query: 160 QSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCN-KSGHISRNCPDGTKTCYVCG 330
++ ++P+ N + N N TC NC ++ + R PDG C CG
Sbjct: 603 KNAEKPTVSNAAEDKKGDANTRRANATNPTPTCTNCQTRTTPLWRRSPDGQPLCNACG 660
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Frame = +1
Query: 148 RECAQSPDEPS-----CYNCNKTGHIARNCPEGGRDN 243
R A PD+P CY C + GH + CP N
Sbjct: 169 RIAASVPDKPPPPGYICYRCGQKGHWIQACPTNADPN 205
>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 708
Score = 26.6 bits (56), Expect = 9.3
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -2
Query: 748 MI*KHNNSFTSCKNKHINVVVSAPTRSYTIQHIITDSTVASSGASVC-HNMSRVAWIPFS 572
+I K N FT+ KN INV+ S ++ I + + C N+ +A +
Sbjct: 628 LIIKSNEKFTAAKNSLINVIKSGFEQNEFINPYFLQTNYLKNLLCCCITNLVSLAILSKD 687
Query: 571 HSASV 557
HSA++
Sbjct: 688 HSANL 692
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 26.6 bits (56), Expect = 9.3
Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Frame = +1
Query: 85 RATARXEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARN--CPEGGR 237
R AR A NG G + P C NC + GH+ N CP GR
Sbjct: 922 RRRARHAAKEGINLNGEG-------RKPTTRKCSNCGQVGHMKTNKICPLFGR 967
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,059,204
Number of Sequences: 5004
Number of extensions: 67581
Number of successful extensions: 226
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 882067430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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