Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_A03_e497_01.seq
(1565 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical ... 83 5e-16
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 64 3e-10
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 64 3e-10
U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical pr... 59 7e-09
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 58 2e-08
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 58 2e-08
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 58 2e-08
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 56 9e-08
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 56 9e-08
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 56 9e-08
Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical pr... 44 3e-04
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 44 3e-04
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 44 3e-04
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 44 3e-04
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 44 4e-04
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 44 4e-04
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 44 4e-04
Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical pr... 42 0.002
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 42 0.002
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 42 0.002
AC006672-5|AAM98003.1| 42|Caenorhabditis elegans Hypothetical ... 39 0.008
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 38 0.015
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 38 0.015
AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical ... 35 0.18
U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical pr... 34 0.32
L12018-4|AAK68342.1| 456|Caenorhabditis elegans Dnaj domain (pr... 33 0.73
L12018-3|AAK68343.1| 446|Caenorhabditis elegans Dnaj domain (pr... 33 0.73
Z92828-7|CAE48500.1| 700|Caenorhabditis elegans Hypothetical pr... 32 1.3
Z81561-2|CAB04551.2| 700|Caenorhabditis elegans Hypothetical pr... 32 1.3
Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical pr... 31 2.9
AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical ... 31 2.9
U20861-8|AAA62297.3| 372|Caenorhabditis elegans Hypothetical pr... 30 3.9
U62281-1|AAD09363.1| 925|Caenorhabditis elegans lipoprotein rec... 30 5.1
AF342986-1|AAL73338.1| 700|Caenorhabditis elegans KAL-1 protein. 30 5.1
AC024794-1|AAK68497.1| 994|Caenorhabditis elegans Hypothetical ... 30 5.1
Z81071-6|CAB03010.1| 464|Caenorhabditis elegans Hypothetical pr... 29 6.8
AC084159-15|AAK39353.1| 418|Caenorhabditis elegans Hypothetical... 29 6.8
U62639-1|AAD09364.1| 925|Caenorhabditis elegans lr protein. 29 9.0
AL031630-5|CAA20985.1| 915|Caenorhabditis elegans Hypothetical ... 29 9.0
AF185706-1|AAD56241.1| 925|Caenorhabditis elegans yolk receptor... 29 9.0
AF036703-1|AAB88554.3| 925|Caenorhabditis elegans Receptor medi... 29 9.0
>AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical
protein K08D12.3a protein.
Length = 151
Score = 83.0 bits (196), Expect = 5e-16
Identities = 46/115 (40%), Positives = 55/115 (47%), Gaps = 29/115 (25%)
Frame = +1
Query: 115 CYRCNGTGHIARECAQSPDEP----------SCYNCNKTGHIARNCP----EGG------ 234
CY C TGH +R+C + SCYNC GH +R+CP EGG
Sbjct: 37 CYNCQETGHFSRDCPKGGSGGGQRGGGGGGGSCYNCGGRGHYSRDCPSARSEGGSGGYGG 96
Query: 235 -----RDNSNQTCYNCNKSGHISRNCPDG----TKTCYVCGKPGHISRDCDEERN 372
R Q CYNC +SGHISR C + K CY C + GHISRDC + N
Sbjct: 97 RGGEGRSFGGQKCYNCGRSGHISRECTESGSAEEKRCYQCQETGHISRDCPSQTN 151
Score = 79.8 bits (188), Expect = 5e-15
Identities = 44/123 (35%), Positives = 59/123 (47%), Gaps = 37/123 (30%)
Frame = +1
Query: 106 ADR-CYRCNGTGHIARECAQSPDE---------PSCYNCNKTGHIARNCPEGGRDNSNQ- 252
+DR CY+C GHI+R C + +CYNC +TGH +R+CP+GG +
Sbjct: 2 SDRNCYKCQQPGHISRNCPNGESDGGRRGGGGGSTCYNCQETGHFSRDCPKGGSGGGQRG 61
Query: 253 ------TCYNCNKSGHISRNCPD--------------------GTKTCYVCGKPGHISRD 354
+CYNC GH SR+CP G + CY CG+ GHISR+
Sbjct: 62 GGGGGGSCYNCGGRGHYSRDCPSARSEGGSGGYGGRGGEGRSFGGQKCYNCGRSGHISRE 121
Query: 355 CDE 363
C E
Sbjct: 122 CTE 124
Score = 74.5 bits (175), Expect = 2e-13
Identities = 35/83 (42%), Positives = 44/83 (53%), Gaps = 18/83 (21%)
Frame = +1
Query: 178 SCYNCNKTGHIARNCPEGGRDNSNQ------TCYNCNKSGHISRNCPDGTK--------- 312
+CY C + GHI+RNCP G D + TCYNC ++GH SR+CP G
Sbjct: 5 NCYKCQQPGHISRNCPNGESDGGRRGGGGGSTCYNCQETGHFSRDCPKGGSGGGQRGGGG 64
Query: 313 ---TCYVCGKPGHISRDCDEERN 372
+CY CG GH SRDC R+
Sbjct: 65 GGGSCYNCGGRGHYSRDCPSARS 87
Score = 60.5 bits (140), Expect = 3e-09
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +1
Query: 55 GSAGNSARGLRATARXEADRCYRCNGTGHIARECAQ--SPDEPSCYNCNKTGHIARNCP 225
GS G RG + +CY C +GHI+REC + S +E CY C +TGHI+R+CP
Sbjct: 90 GSGGYGGRGGEGRS-FGGQKCYNCGRSGHISRECTESGSAEEKRCYQCQETGHISRDCP 147
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 63.7 bits (148), Expect = 3e-10
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Frame = +1
Query: 115 CYRCNGTGHIARECAQSPDEPS--CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHIS 288
C+ C GHI++EC P P C NC + GH A +C + C NC GH +
Sbjct: 572 CHNCGEEGHISKEC-DKPKVPRFPCRNCEQLGHFASDCDQPRVPRG--PCRNCGIEGHFA 628
Query: 289 RNCPDGTKT----CYVCGKPGHISRDCDEER 369
+C D K C CG+ GH ++DC ER
Sbjct: 629 VDC-DQPKVPRGPCRNCGQEGHFAKDCQNER 658
Score = 48.0 bits (109), Expect = 2e-05
Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Frame = +1
Query: 115 CYRCNGTGHIARECAQSPDEPS--CYNCNKTGHIARNCP-EGGRDNSNQTCYNCNKSGHI 285
C C GH A +C Q P P C NC + GH A++C E R + C C + GH
Sbjct: 618 CRNCGIEGHFAVDCDQ-PKVPRGPCRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGHW 676
Query: 286 SRNCPDGTK 312
CP K
Sbjct: 677 GYECPTRPK 685
Score = 33.5 bits (73), Expect = 0.42
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Frame = +1
Query: 115 CYRCNGTGHIARECAQS-----PDEPSCYNCNKTGHIARNCPEGGRD 240
C C GH A++C P EP C C + GH CP +D
Sbjct: 641 CRNCGQEGHFAKDCQNERVRMEPTEP-CRRCAEEGHWGYECPTRPKD 686
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 63.7 bits (148), Expect = 3e-10
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Frame = +1
Query: 115 CYRCNGTGHIARECAQSPDEPS--CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHIS 288
C+ C GHI++EC P P C NC + GH A +C + C NC GH +
Sbjct: 572 CHNCGEEGHISKEC-DKPKVPRFPCRNCEQLGHFASDCDQPRVPRG--PCRNCGIEGHFA 628
Query: 289 RNCPDGTKT----CYVCGKPGHISRDCDEER 369
+C D K C CG+ GH ++DC ER
Sbjct: 629 VDC-DQPKVPRGPCRNCGQEGHFAKDCQNER 658
Score = 48.0 bits (109), Expect = 2e-05
Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Frame = +1
Query: 115 CYRCNGTGHIARECAQSPDEPS--CYNCNKTGHIARNCP-EGGRDNSNQTCYNCNKSGHI 285
C C GH A +C Q P P C NC + GH A++C E R + C C + GH
Sbjct: 618 CRNCGIEGHFAVDCDQ-PKVPRGPCRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGHW 676
Query: 286 SRNCPDGTK 312
CP K
Sbjct: 677 GYECPTRPK 685
Score = 33.5 bits (73), Expect = 0.42
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Frame = +1
Query: 115 CYRCNGTGHIARECAQS-----PDEPSCYNCNKTGHIARNCPEGGRD 240
C C GH A++C P EP C C + GH CP +D
Sbjct: 641 CRNCGQEGHFAKDCQNERVRMEPTEP-CRRCAEEGHWGYECPTRPKD 686
>U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical
protein F07E5.5 protein.
Length = 384
Score = 59.3 bits (137), Expect = 7e-09
Identities = 33/105 (31%), Positives = 45/105 (42%), Gaps = 12/105 (11%)
Frame = +1
Query: 85 RATARXEADRCYRCNGTGHIARECAQ---SPDEPSCYNCNKTGHIARNCPEGG-RDNSNQ 252
R + C+ C GH +C + S + C+ C H C + G +
Sbjct: 221 RQDQKITGSACFHCREPGHRLADCPKRNSSSSDGVCFKCGSMEHSIHECKKKGVKGFPYA 280
Query: 253 TCYNCNKSGHISRNC--------PDGTKTCYVCGKPGHISRDCDE 363
TC+ C + GHISR+C PDG C VCG H+ RDC E
Sbjct: 281 TCFVCKQVGHISRDCHQNVNGVYPDG-GCCNVCGANTHLRRDCPE 324
Score = 58.0 bits (134), Expect = 2e-08
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Frame = +1
Query: 178 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNC-PDGTK-----TCYVCGKPG 339
+C++C + GH +CP+ +S+ C+ C H C G K TC+VC + G
Sbjct: 230 ACFHCREPGHRLADCPKRNSSSSDGVCFKCGSMEHSIHECKKKGVKGFPYATCFVCKQVG 289
Query: 340 HISRDCDEERN 372
HISRDC + N
Sbjct: 290 HISRDCHQNVN 300
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 57.6 bits (133), Expect = 2e-08
Identities = 26/54 (48%), Positives = 32/54 (59%), Gaps = 7/54 (12%)
Frame = +1
Query: 229 GGRDNS--NQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRDCDEER 369
GG+D N C+NC + GH S +CP+ K CY C +PGH SRDC EER
Sbjct: 248 GGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER 301
Score = 57.6 bits (133), Expect = 2e-08
Identities = 19/45 (42%), Positives = 30/45 (66%)
Frame = +1
Query: 178 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTK 312
+C+NC + GH + +CPE ++ + CYNC + GH SR+CP+ K
Sbjct: 258 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERK 302
Score = 57.6 bits (133), Expect = 2e-08
Identities = 26/54 (48%), Positives = 32/54 (59%), Gaps = 7/54 (12%)
Frame = +1
Query: 229 GGRDNS--NQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRDCDEER 369
GG+D N C+NC + GH S +CP+ K CY C +PGH SRDC EER
Sbjct: 362 GGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER 415
Score = 57.6 bits (133), Expect = 2e-08
Identities = 19/45 (42%), Positives = 30/45 (66%)
Frame = +1
Query: 178 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTK 312
+C+NC + GH + +CPE ++ + CYNC + GH SR+CP+ K
Sbjct: 372 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERK 416
Score = 55.6 bits (128), Expect = 9e-08
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Frame = +1
Query: 115 CYRCNGTGHIARECAQS--PDE-----PSCYNCNKTGHIARNCPEGGRDNSNQ---TCYN 264
CY C GH +R+C + P E S + G EG +N + C+N
Sbjct: 398 CYNCQQPGHNSRDCPEERKPREGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGPMKCFN 457
Query: 265 CNKSGHISRNCPDGTKTCYVCGKPGHISRDC 357
C GH S CP+ + C+ CG+ GH S +C
Sbjct: 458 CKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 488
Score = 48.0 bits (109), Expect = 2e-05
Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 15/100 (15%)
Frame = +1
Query: 109 DRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPE------------GGRDN 243
+ C+ C GH + +C + E CYNC + GH +R+CPE G
Sbjct: 371 NNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKPREGRNGFTSGFGG 430
Query: 244 SNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDCDE 363
N + + N G C+ C GH S +C E
Sbjct: 431 GNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPE 470
Score = 48.0 bits (109), Expect = 2e-05
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +1
Query: 55 GSAGNSARGLRATARXEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 225
G G +A G +C+ C G GH + EC + P C+NC + GH + CP
Sbjct: 435 GFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPP--RGCFNCGEQGHRSNECP 489
Score = 47.2 bits (107), Expect = 3e-05
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Frame = +1
Query: 55 GSAGNS---ARGLRATARXEADR-CYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIA 213
GS GNS G R E + C+ C GH + +C + E CYNC + GH +
Sbjct: 235 GSGGNSNGFGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNS 294
Query: 214 RNCPEGGRDNSNQTCYNCNKSG 279
R+CPE + + + SG
Sbjct: 295 RDCPEERKPREGRNGFTGGSSG 316
Score = 44.4 bits (100), Expect = 2e-04
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +1
Query: 181 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTK 312
C+NC GH + CPE R C+NC + GH S CP+ K
Sbjct: 455 CFNCKGEGHRSAECPEPPRG-----CFNCGEQGHRSNECPNPAK 493
Score = 29.1 bits (62), Expect = 9.0
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 274 SGHISRNCPDGTKTCYVCGKPGHISRDCDEERN*HAP 384
SG ++ + C+ C +PGH S DC E + P
Sbjct: 245 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREP 281
Score = 29.1 bits (62), Expect = 9.0
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 274 SGHISRNCPDGTKTCYVCGKPGHISRDCDEERN*HAP 384
SG ++ + C+ C +PGH S DC E + P
Sbjct: 359 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREP 395
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 57.6 bits (133), Expect = 2e-08
Identities = 26/54 (48%), Positives = 32/54 (59%), Gaps = 7/54 (12%)
Frame = +1
Query: 229 GGRDNS--NQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRDCDEER 369
GG+D N C+NC + GH S +CP+ K CY C +PGH SRDC EER
Sbjct: 248 GGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER 301
Score = 57.6 bits (133), Expect = 2e-08
Identities = 19/45 (42%), Positives = 30/45 (66%)
Frame = +1
Query: 178 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTK 312
+C+NC + GH + +CPE ++ + CYNC + GH SR+CP+ K
Sbjct: 258 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERK 302
Score = 57.6 bits (133), Expect = 2e-08
Identities = 26/54 (48%), Positives = 32/54 (59%), Gaps = 7/54 (12%)
Frame = +1
Query: 229 GGRDNS--NQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRDCDEER 369
GG+D N C+NC + GH S +CP+ K CY C +PGH SRDC EER
Sbjct: 362 GGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER 415
Score = 57.6 bits (133), Expect = 2e-08
Identities = 19/45 (42%), Positives = 30/45 (66%)
Frame = +1
Query: 178 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTK 312
+C+NC + GH + +CPE ++ + CYNC + GH SR+CP+ K
Sbjct: 372 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERK 416
Score = 55.6 bits (128), Expect = 9e-08
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Frame = +1
Query: 115 CYRCNGTGHIARECAQS--PDE-----PSCYNCNKTGHIARNCPEGGRDNSNQ---TCYN 264
CY C GH +R+C + P E S + G EG +N + C+N
Sbjct: 398 CYNCQQPGHNSRDCPEERKPREGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGPMKCFN 457
Query: 265 CNKSGHISRNCPDGTKTCYVCGKPGHISRDC 357
C GH S CP+ + C+ CG+ GH S +C
Sbjct: 458 CKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 488
Score = 48.0 bits (109), Expect = 2e-05
Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 15/100 (15%)
Frame = +1
Query: 109 DRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPE------------GGRDN 243
+ C+ C GH + +C + E CYNC + GH +R+CPE G
Sbjct: 371 NNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKPREGRNGFTSGFGG 430
Query: 244 SNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDCDE 363
N + + N G C+ C GH S +C E
Sbjct: 431 GNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPE 470
Score = 48.0 bits (109), Expect = 2e-05
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +1
Query: 55 GSAGNSARGLRATARXEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 225
G G +A G +C+ C G GH + EC + P C+NC + GH + CP
Sbjct: 435 GFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPP--RGCFNCGEQGHRSNECP 489
Score = 47.2 bits (107), Expect = 3e-05
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Frame = +1
Query: 55 GSAGNS---ARGLRATARXEADR-CYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIA 213
GS GNS G R E + C+ C GH + +C + E CYNC + GH +
Sbjct: 235 GSGGNSNGFGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNS 294
Query: 214 RNCPEGGRDNSNQTCYNCNKSG 279
R+CPE + + + SG
Sbjct: 295 RDCPEERKPREGRNGFTGGSSG 316
Score = 44.4 bits (100), Expect = 2e-04
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +1
Query: 181 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTK 312
C+NC GH + CPE R C+NC + GH S CP+ K
Sbjct: 455 CFNCKGEGHRSAECPEPPRG-----CFNCGEQGHRSNECPNPAK 493
Score = 29.1 bits (62), Expect = 9.0
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 274 SGHISRNCPDGTKTCYVCGKPGHISRDCDEERN*HAP 384
SG ++ + C+ C +PGH S DC E + P
Sbjct: 245 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREP 281
Score = 29.1 bits (62), Expect = 9.0
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 274 SGHISRNCPDGTKTCYVCGKPGHISRDCDEERN*HAP 384
SG ++ + C+ C +PGH S DC E + P
Sbjct: 359 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREP 395
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 57.6 bits (133), Expect = 2e-08
Identities = 26/54 (48%), Positives = 32/54 (59%), Gaps = 7/54 (12%)
Frame = +1
Query: 229 GGRDNS--NQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRDCDEER 369
GG+D N C+NC + GH S +CP+ K CY C +PGH SRDC EER
Sbjct: 248 GGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER 301
Score = 57.6 bits (133), Expect = 2e-08
Identities = 19/45 (42%), Positives = 30/45 (66%)
Frame = +1
Query: 178 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTK 312
+C+NC + GH + +CPE ++ + CYNC + GH SR+CP+ K
Sbjct: 258 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERK 302
Score = 57.6 bits (133), Expect = 2e-08
Identities = 26/54 (48%), Positives = 32/54 (59%), Gaps = 7/54 (12%)
Frame = +1
Query: 229 GGRDNS--NQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRDCDEER 369
GG+D N C+NC + GH S +CP+ K CY C +PGH SRDC EER
Sbjct: 362 GGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER 415
Score = 57.6 bits (133), Expect = 2e-08
Identities = 19/45 (42%), Positives = 30/45 (66%)
Frame = +1
Query: 178 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTK 312
+C+NC + GH + +CPE ++ + CYNC + GH SR+CP+ K
Sbjct: 372 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERK 416
Score = 55.6 bits (128), Expect = 9e-08
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Frame = +1
Query: 115 CYRCNGTGHIARECAQS--PDE-----PSCYNCNKTGHIARNCPEGGRDNSNQ---TCYN 264
CY C GH +R+C + P E S + G EG +N + C+N
Sbjct: 398 CYNCQQPGHNSRDCPEERKPREGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGPMKCFN 457
Query: 265 CNKSGHISRNCPDGTKTCYVCGKPGHISRDC 357
C GH S CP+ + C+ CG+ GH S +C
Sbjct: 458 CKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 488
Score = 48.0 bits (109), Expect = 2e-05
Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 15/100 (15%)
Frame = +1
Query: 109 DRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPE------------GGRDN 243
+ C+ C GH + +C + E CYNC + GH +R+CPE G
Sbjct: 371 NNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKPREGRNGFTSGFGG 430
Query: 244 SNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDCDE 363
N + + N G C+ C GH S +C E
Sbjct: 431 GNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPE 470
Score = 48.0 bits (109), Expect = 2e-05
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +1
Query: 55 GSAGNSARGLRATARXEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 225
G G +A G +C+ C G GH + EC + P C+NC + GH + CP
Sbjct: 435 GFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPP--RGCFNCGEQGHRSNECP 489
Score = 47.2 bits (107), Expect = 3e-05
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Frame = +1
Query: 55 GSAGNS---ARGLRATARXEADR-CYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIA 213
GS GNS G R E + C+ C GH + +C + E CYNC + GH +
Sbjct: 235 GSGGNSNGFGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNS 294
Query: 214 RNCPEGGRDNSNQTCYNCNKSG 279
R+CPE + + + SG
Sbjct: 295 RDCPEERKPREGRNGFTGGSSG 316
Score = 44.4 bits (100), Expect = 2e-04
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +1
Query: 181 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTK 312
C+NC GH + CPE R C+NC + GH S CP+ K
Sbjct: 455 CFNCKGEGHRSAECPEPPRG-----CFNCGEQGHRSNECPNPAK 493
Score = 29.1 bits (62), Expect = 9.0
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 274 SGHISRNCPDGTKTCYVCGKPGHISRDCDEERN*HAP 384
SG ++ + C+ C +PGH S DC E + P
Sbjct: 245 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREP 281
Score = 29.1 bits (62), Expect = 9.0
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 274 SGHISRNCPDGTKTCYVCGKPGHISRDCDEERN*HAP 384
SG ++ + C+ C +PGH S DC E + P
Sbjct: 359 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREP 395
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 55.6 bits (128), Expect = 9e-08
Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 5/52 (9%)
Frame = +1
Query: 229 GGRDNSNQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRDCDEER 369
GG N+N C+NC + GH S +CP+ K CY C +PGH SR+C EER
Sbjct: 153 GGERNNN--CFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEER 202
Score = 54.8 bits (126), Expect = 2e-07
Identities = 28/93 (30%), Positives = 37/93 (39%), Gaps = 12/93 (12%)
Frame = +1
Query: 115 CYRCNGTGHIARECAQS--PDEPSCYNCNKTGHIARNCPE----------GGRDNSNQTC 258
CY C GH +REC + P E N GG + C
Sbjct: 185 CYNCQQPGHTSRECTEERKPREGRTGGFGGGAGFGNNGGNDGFGGDGGFGGGEERGPMKC 244
Query: 259 YNCNKSGHISRNCPDGTKTCYVCGKPGHISRDC 357
+NC GH S CP+ + C+ CG+ GH S +C
Sbjct: 245 FNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 277
Score = 54.4 bits (125), Expect = 2e-07
Identities = 18/45 (40%), Positives = 28/45 (62%)
Frame = +1
Query: 178 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTK 312
+C+NC + GH + +CPE ++ + CYNC + GH SR C + K
Sbjct: 159 NCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERK 203
Score = 44.4 bits (100), Expect = 2e-04
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 112 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 225
+C+ C G GH + EC + P C+NC + GH + CP
Sbjct: 243 KCFNCKGEGHRSAECPEPP--RGCFNCGEQGHRSNECP 278
Score = 44.4 bits (100), Expect = 2e-04
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +1
Query: 181 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTK 312
C+NC GH + CPE R C+NC + GH S CP+ K
Sbjct: 244 CFNCKGEGHRSAECPEPPRG-----CFNCGEQGHRSNECPNPAK 282
Score = 41.9 bits (94), Expect = 0.001
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Frame = +1
Query: 64 GNSARGLRATARXEADR-CYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPEG 231
GNS G E + C+ C GH + +C + E CYNC + GH +R C E
Sbjct: 142 GNSGFGEGGHGGGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEE 201
Query: 232 GRDNSNQT 255
+ +T
Sbjct: 202 RKPREGRT 209
Score = 29.5 bits (63), Expect = 6.8
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 316 CYVCGKPGHISRDCDEERN*HAP 384
C+ C +PGH S DC E R P
Sbjct: 160 CFNCQQPGHRSSDCPEPRKEREP 182
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 55.6 bits (128), Expect = 9e-08
Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 5/52 (9%)
Frame = +1
Query: 229 GGRDNSNQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRDCDEER 369
GG N+N C+NC + GH S +CP+ K CY C +PGH SR+C EER
Sbjct: 153 GGERNNN--CFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEER 202
Score = 54.8 bits (126), Expect = 2e-07
Identities = 28/93 (30%), Positives = 37/93 (39%), Gaps = 12/93 (12%)
Frame = +1
Query: 115 CYRCNGTGHIARECAQS--PDEPSCYNCNKTGHIARNCPE----------GGRDNSNQTC 258
CY C GH +REC + P E N GG + C
Sbjct: 185 CYNCQQPGHTSRECTEERKPREGRTGGFGGGAGFGNNGGNDGFGGDGGFGGGEERGPMKC 244
Query: 259 YNCNKSGHISRNCPDGTKTCYVCGKPGHISRDC 357
+NC GH S CP+ + C+ CG+ GH S +C
Sbjct: 245 FNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 277
Score = 54.4 bits (125), Expect = 2e-07
Identities = 18/45 (40%), Positives = 28/45 (62%)
Frame = +1
Query: 178 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTK 312
+C+NC + GH + +CPE ++ + CYNC + GH SR C + K
Sbjct: 159 NCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERK 203
Score = 44.4 bits (100), Expect = 2e-04
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 112 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 225
+C+ C G GH + EC + P C+NC + GH + CP
Sbjct: 243 KCFNCKGEGHRSAECPEPP--RGCFNCGEQGHRSNECP 278
Score = 44.4 bits (100), Expect = 2e-04
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +1
Query: 181 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTK 312
C+NC GH + CPE R C+NC + GH S CP+ K
Sbjct: 244 CFNCKGEGHRSAECPEPPRG-----CFNCGEQGHRSNECPNPAK 282
Score = 41.9 bits (94), Expect = 0.001
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Frame = +1
Query: 64 GNSARGLRATARXEADR-CYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPEG 231
GNS G E + C+ C GH + +C + E CYNC + GH +R C E
Sbjct: 142 GNSGFGEGGHGGGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEE 201
Query: 232 GRDNSNQT 255
+ +T
Sbjct: 202 RKPREGRT 209
Score = 29.5 bits (63), Expect = 6.8
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 316 CYVCGKPGHISRDCDEERN*HAP 384
C+ C +PGH S DC E R P
Sbjct: 160 CFNCQQPGHRSSDCPEPRKEREP 182
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 55.6 bits (128), Expect = 9e-08
Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 5/52 (9%)
Frame = +1
Query: 229 GGRDNSNQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRDCDEER 369
GG N+N C+NC + GH S +CP+ K CY C +PGH SR+C EER
Sbjct: 153 GGERNNN--CFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEER 202
Score = 54.8 bits (126), Expect = 2e-07
Identities = 28/93 (30%), Positives = 37/93 (39%), Gaps = 12/93 (12%)
Frame = +1
Query: 115 CYRCNGTGHIARECAQS--PDEPSCYNCNKTGHIARNCPE----------GGRDNSNQTC 258
CY C GH +REC + P E N GG + C
Sbjct: 185 CYNCQQPGHTSRECTEERKPREGRTGGFGGGAGFGNNGGNDGFGGDGGFGGGEERGPMKC 244
Query: 259 YNCNKSGHISRNCPDGTKTCYVCGKPGHISRDC 357
+NC GH S CP+ + C+ CG+ GH S +C
Sbjct: 245 FNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 277
Score = 54.4 bits (125), Expect = 2e-07
Identities = 18/45 (40%), Positives = 28/45 (62%)
Frame = +1
Query: 178 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTK 312
+C+NC + GH + +CPE ++ + CYNC + GH SR C + K
Sbjct: 159 NCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERK 203
Score = 44.4 bits (100), Expect = 2e-04
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 112 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 225
+C+ C G GH + EC + P C+NC + GH + CP
Sbjct: 243 KCFNCKGEGHRSAECPEPP--RGCFNCGEQGHRSNECP 278
Score = 44.4 bits (100), Expect = 2e-04
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +1
Query: 181 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTK 312
C+NC GH + CPE R C+NC + GH S CP+ K
Sbjct: 244 CFNCKGEGHRSAECPEPPRG-----CFNCGEQGHRSNECPNPAK 282
Score = 41.9 bits (94), Expect = 0.001
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Frame = +1
Query: 64 GNSARGLRATARXEADR-CYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPEG 231
GNS G E + C+ C GH + +C + E CYNC + GH +R C E
Sbjct: 142 GNSGFGEGGHGGGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEE 201
Query: 232 GRDNSNQT 255
+ +T
Sbjct: 202 RKPREGRT 209
Score = 29.5 bits (63), Expect = 6.8
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 316 CYVCGKPGHISRDCDEERN*HAP 384
C+ C +PGH S DC E R P
Sbjct: 160 CFNCQQPGHRSSDCPEPRKEREP 182
>Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical
protein F02E9.2b protein.
Length = 196
Score = 44.0 bits (99), Expect = 3e-04
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = +1
Query: 223 PEGGRDNSNQTCYNCNK-SGHISRNCPD---GTKTCYVCGKPGHISRDCDEERN*HAP 384
P G + + C+ C K + H +++CP+ K CY CG H+S C E R H P
Sbjct: 102 PLGRKKAVSLRCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRRKHRP 159
Score = 35.1 bits (77), Expect = 0.14
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +1
Query: 112 RCYRCNGTG-HIARECAQ-SPDEPSCYNCNKTGHIARNCPEGGR 237
RC+RC H A+ C D CY C H++ CPE R
Sbjct: 112 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRR 155
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 44.0 bits (99), Expect = 3e-04
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = +1
Query: 223 PEGGRDNSNQTCYNCNK-SGHISRNCPD---GTKTCYVCGKPGHISRDCDEERN*HAP 384
P G + + C+ C K + H +++CP+ K CY CG H+S C E R H P
Sbjct: 133 PLGRKKAVSLRCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRRKHRP 190
Score = 35.1 bits (77), Expect = 0.14
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +1
Query: 112 RCYRCNGTG-HIARECAQ-SPDEPSCYNCNKTGHIARNCPEGGR 237
RC+RC H A+ C D CY C H++ CPE R
Sbjct: 143 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRR 186
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 44.0 bits (99), Expect = 3e-04
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = +1
Query: 223 PEGGRDNSNQTCYNCNK-SGHISRNCPD---GTKTCYVCGKPGHISRDCDEERN*HAP 384
P G + + C+ C K + H +++CP+ K CY CG H+S C E R H P
Sbjct: 133 PLGRKKAVSLRCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRRKHRP 190
Score = 35.1 bits (77), Expect = 0.14
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +1
Query: 112 RCYRCNGTG-HIARECAQ-SPDEPSCYNCNKTGHIARNCPEGGR 237
RC+RC H A+ C D CY C H++ CPE R
Sbjct: 143 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRR 186
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 44.0 bits (99), Expect = 3e-04
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = +1
Query: 223 PEGGRDNSNQTCYNCNK-SGHISRNCPD---GTKTCYVCGKPGHISRDCDEERN*HAP 384
P G + + C+ C K + H +++CP+ K CY CG H+S C E R H P
Sbjct: 133 PLGRKKAVSLRCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRRKHRP 190
Score = 35.1 bits (77), Expect = 0.14
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +1
Query: 112 RCYRCNGTG-HIARECAQ-SPDEPSCYNCNKTGHIARNCPEGGR 237
RC+RC H A+ C D CY C H++ CPE R
Sbjct: 143 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRR 186
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 43.6 bits (98), Expect = 4e-04
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = +1
Query: 160 QSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSG-HISRNCPDGTKTCYVCGKP 336
Q+P + C +C + G C + +DN++Q C C +SG H++ + C+ C +
Sbjct: 625 QNPSD-RCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASCFKLKNRACFRCNEM 683
Query: 337 GHISRDCDEE 366
GHI+ +C ++
Sbjct: 684 GHIAWNCPKK 693
Score = 40.7 bits (91), Expect = 0.003
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 106 ADRCYRCNGTGHIARECAQ-SPDEPS--CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKS 276
+DRC C G C++ S D S C C ++G +C + N+ C+ CN+
Sbjct: 628 SDRCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASCFK----LKNRACFRCNEM 683
Query: 277 GHISRNCP 300
GHI+ NCP
Sbjct: 684 GHIAWNCP 691
Score = 38.3 bits (85), Expect = 0.015
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 106 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQ 252
+ +C C +G C + + +C+ CN+ GHIA NCP+ + S +
Sbjct: 653 SQKCDECQQSGWHMASCFKLKNR-ACFRCNEMGHIAWNCPKKNENTSEK 700
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 43.6 bits (98), Expect = 4e-04
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = +1
Query: 160 QSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSG-HISRNCPDGTKTCYVCGKP 336
Q+P + C +C + G C + +DN++Q C C +SG H++ + C+ C +
Sbjct: 528 QNPSD-RCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASCFKLKNRACFRCNEM 586
Query: 337 GHISRDCDEE 366
GHI+ +C ++
Sbjct: 587 GHIAWNCPKK 596
Score = 40.7 bits (91), Expect = 0.003
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 106 ADRCYRCNGTGHIARECAQ-SPDEPS--CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKS 276
+DRC C G C++ S D S C C ++G +C + N+ C+ CN+
Sbjct: 531 SDRCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASCFK----LKNRACFRCNEM 586
Query: 277 GHISRNCP 300
GHI+ NCP
Sbjct: 587 GHIAWNCP 594
Score = 38.3 bits (85), Expect = 0.015
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 106 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQ 252
+ +C C +G C + + +C+ CN+ GHIA NCP+ + S +
Sbjct: 556 SQKCDECQQSGWHMASCFKLKNR-ACFRCNEMGHIAWNCPKKNENTSEK 603
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 43.6 bits (98), Expect = 4e-04
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = +1
Query: 160 QSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSG-HISRNCPDGTKTCYVCGKP 336
Q+P + C +C + G C + +DN++Q C C +SG H++ + C+ C +
Sbjct: 539 QNPSD-RCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASCFKLKNRACFRCNEM 597
Query: 337 GHISRDCDEE 366
GHI+ +C ++
Sbjct: 598 GHIAWNCPKK 607
Score = 40.7 bits (91), Expect = 0.003
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 106 ADRCYRCNGTGHIARECAQ-SPDEPS--CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKS 276
+DRC C G C++ S D S C C ++G +C + N+ C+ CN+
Sbjct: 542 SDRCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASCFK----LKNRACFRCNEM 597
Query: 277 GHISRNCP 300
GHI+ NCP
Sbjct: 598 GHIAWNCP 605
Score = 38.3 bits (85), Expect = 0.015
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 106 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQ 252
+ +C C +G C + + +C+ CN+ GHIA NCP+ + S +
Sbjct: 567 SQKCDECQQSGWHMASCFKLKNR-ACFRCNEMGHIAWNCPKKNENTSEK 614
>Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical
protein F11A10.8 protein.
Length = 302
Score = 41.5 bits (93), Expect = 0.002
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +1
Query: 178 SCYNCNKTGHIARNCPE-GGRDNSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRD 354
+C+NC++ GH A CP G+ NQ ++ I TCY CG+ GH +
Sbjct: 205 TCHNCHERGHKATTCPHLPGQTRQNQDHHHRVDLSLIPDKKNLSDVTCYKCGEKGHYANR 264
Query: 355 C 357
C
Sbjct: 265 C 265
Score = 37.9 bits (84), Expect = 0.019
Identities = 18/68 (26%), Positives = 30/68 (44%)
Frame = +1
Query: 103 EADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGH 282
+A C+ C+ GH A C P + N + + + ++ S+ TCY C + GH
Sbjct: 202 QAITCHNCHERGHKATTCPHLPGQTR-QNQDHHHRVDLSLIPDKKNLSDVTCYKCGEKGH 260
Query: 283 ISRNCPDG 306
+ C G
Sbjct: 261 YANRCHKG 268
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 41.5 bits (93), Expect = 0.002
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 247 NQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDC 357
+ TC+NC K GH + C + C CG P H + +C
Sbjct: 201 SNTCFNCKKYGHRATECSAPQRECANCGDPNHRANEC 237
Score = 33.9 bits (74), Expect = 0.32
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +1
Query: 178 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTK 312
+C+NC K GH A C R+ C NC H + C +K
Sbjct: 203 TCFNCKKYGHRATECSAPQRE-----CANCGDPNHRANECASWSK 242
Score = 33.5 bits (73), Expect = 0.42
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +1
Query: 106 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 222
++ C+ C GH A EC S + C NC H A C
Sbjct: 201 SNTCFNCKKYGHRATEC--SAPQRECANCGDPNHRANEC 237
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 41.5 bits (93), Expect = 0.002
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 247 NQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDC 357
+ TC+NC K GH + C + C CG P H + +C
Sbjct: 201 SNTCFNCKKYGHRATECSAPQRECANCGDPNHRANEC 237
Score = 33.9 bits (74), Expect = 0.32
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +1
Query: 178 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTK 312
+C+NC K GH A C R+ C NC H + C +K
Sbjct: 203 TCFNCKKYGHRATECSAPQRE-----CANCGDPNHRANECASWSK 242
Score = 33.5 bits (73), Expect = 0.42
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +1
Query: 106 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 222
++ C+ C GH A EC S + C NC H A C
Sbjct: 201 SNTCFNCKKYGHRATEC--SAPQRECANCGDPNHRANEC 237
>AC006672-5|AAM98003.1| 42|Caenorhabditis elegans Hypothetical
protein K08D12.3b protein.
Length = 42
Score = 39.1 bits (87), Expect = 0.008
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +1
Query: 244 SNQTCYNCNKSGHISRNCPDG 306
S++ CY C + GHISRNCP+G
Sbjct: 2 SDRNCYKCQQPGHISRNCPNG 22
Score = 37.1 bits (82), Expect = 0.034
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 178 SCYNCNKTGHIARNCPEGGRDNSNQ 252
+CY C + GHI+RNCP G D +
Sbjct: 5 NCYKCQQPGHISRNCPNGESDGGRR 29
Score = 31.5 bits (68), Expect = 1.7
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 310 KTCYVCGKPGHISRDC 357
+ CY C +PGHISR+C
Sbjct: 4 RNCYKCQQPGHISRNC 19
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 38.3 bits (85), Expect = 0.015
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1
Query: 181 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNC 297
C NC H + CP+ + C NC GHIS++C
Sbjct: 430 CSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISKDC 468
Score = 37.5 bits (83), Expect = 0.026
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Frame = +1
Query: 256 CYNCNKSGHISRNCPDGTKT-----CYVCGKPGHISRDCDEERN*HA 381
C NC H S CPD C CG GHIS+DC + +A
Sbjct: 430 CSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISKDCKNPKGMYA 476
Score = 35.5 bits (78), Expect = 0.10
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Frame = +1
Query: 112 RCYRCNGTGHIARECAQSP---DEPSCYNCNKTGHIARNC--PEG 231
RC C H + EC +P ++ C NC GHI+++C P+G
Sbjct: 429 RCSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISKDCKNPKG 473
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 38.3 bits (85), Expect = 0.015
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1
Query: 181 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNC 297
C NC H + CP+ + C NC GHIS++C
Sbjct: 430 CSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISKDC 468
Score = 37.5 bits (83), Expect = 0.026
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Frame = +1
Query: 256 CYNCNKSGHISRNCPDGTKT-----CYVCGKPGHISRDCDEERN*HA 381
C NC H S CPD C CG GHIS+DC + +A
Sbjct: 430 CSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISKDCKNPKGMYA 476
Score = 35.5 bits (78), Expect = 0.10
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Frame = +1
Query: 112 RCYRCNGTGHIARECAQSP---DEPSCYNCNKTGHIARNC--PEG 231
RC C H + EC +P ++ C NC GHI+++C P+G
Sbjct: 429 RCSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISKDCKNPKG 473
>AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical
protein K02F6.1 protein.
Length = 783
Score = 34.7 bits (76), Expect = 0.18
Identities = 17/55 (30%), Positives = 22/55 (40%)
Frame = +1
Query: 115 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSG 279
CY+C GH++++C QS N KT H N E G N G
Sbjct: 313 CYKCKVVGHVSKDCPQSSTNSGVTN-RKTEHSEVNTLEVGSGRQTSPSLRLNVEG 366
Score = 31.5 bits (68), Expect = 1.7
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = +1
Query: 175 PSCYNCNKTGHIARNCPEGGRDN 243
P CY C GH++++CP+ ++
Sbjct: 311 PYCYKCKVVGHVSKDCPQSSTNS 333
Score = 29.1 bits (62), Expect = 9.0
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 256 CYNCNKSGHISRNCPDGT 309
CY C GH+S++CP +
Sbjct: 313 CYKCKVVGHVSKDCPQSS 330
>U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical protein
K10D2.3 protein.
Length = 1425
Score = 33.9 bits (74), Expect = 0.32
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 11/66 (16%)
Frame = +1
Query: 142 IARECAQ--SPDEPSCYNCNKTGHIARNCPEGG---------RDNSNQTCYNCNKSGHIS 288
+ R+C Q +P + C+ C++ GH +CP+ NS + Y N SG
Sbjct: 1342 LLRKCNQGSAPTDRQCHQCHRIGHFVESCPQRALAKEARKRFGSNSTNSSYRSNDSGRGF 1401
Query: 289 RNCPDG 306
+N +G
Sbjct: 1402 KNGEEG 1407
>L12018-4|AAK68342.1| 456|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 10, isoform a
protein.
Length = 456
Score = 32.7 bits (71), Expect = 0.73
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +1
Query: 115 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRN 294
C +C+GT + + SC CN TG +++ +GG TC C SGH ++N
Sbjct: 191 CLKCHGT-----QVEPGHKKTSCPYCNGTGAVSQRL-QGGFFYQT-TCNRCRGSGHYNKN 243
>L12018-3|AAK68343.1| 446|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 10, isoform b
protein.
Length = 446
Score = 32.7 bits (71), Expect = 0.73
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +1
Query: 115 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRN 294
C +C+GT + + SC CN TG +++ +GG TC C SGH ++N
Sbjct: 191 CLKCHGT-----QVEPGHKKTSCPYCNGTGAVSQRL-QGGFFYQT-TCNRCRGSGHYNKN 243
>Z92828-7|CAE48500.1| 700|Caenorhabditis elegans Hypothetical
protein K03D10.1 protein.
Length = 700
Score = 31.9 bits (69), Expect = 1.3
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +1
Query: 148 RECAQSPDEPSCYN-CNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTKTC 318
+ C S D +C + C+ I + P SNQ+ Y C+ + CP+ K C
Sbjct: 78 KSCVASDDRETCEDSCHYLQRIYQEKPGACPSVSNQSNYECSALCQMDGECPETQKCC 135
>Z81561-2|CAB04551.2| 700|Caenorhabditis elegans Hypothetical
protein K03D10.1 protein.
Length = 700
Score = 31.9 bits (69), Expect = 1.3
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +1
Query: 148 RECAQSPDEPSCYN-CNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTKTC 318
+ C S D +C + C+ I + P SNQ+ Y C+ + CP+ K C
Sbjct: 78 KSCVASDDRETCEDSCHYLQRIYQEKPGACPSVSNQSNYECSALCQMDGECPETQKCC 135
>Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical
protein C27B7.5 protein.
Length = 386
Score = 30.7 bits (66), Expect = 2.9
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +1
Query: 163 SPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCP 300
SP + +K R GR C++C + GHISR CP
Sbjct: 140 SPRSDGMGSSSKRPRSGRRTGRRGRGGPGH-CFHCQEHGHISRMCP 184
>AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical
protein F54G2.2 protein.
Length = 1023
Score = 30.7 bits (66), Expect = 2.9
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Frame = +1
Query: 166 PDEPSCYNCNKTGHIARNC---PEGG-RDNSNQTCYNCNKSGHISRNCP 300
P+ C C + G +C P+ R+ C+ C + GHIS CP
Sbjct: 576 PENGICAECKQVGGHEPSCSLAPKTWKRERPPPQCFTCGEMGHISTYCP 624
Score = 29.9 bits (64), Expect = 5.1
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
Frame = +1
Query: 115 CYRCNGTGHIARECAQSPDE-------PSCYNCNKTGHIARNCPE 228
C C G C+ +P P C+ C + GHI+ CP+
Sbjct: 581 CAECKQVGGHEPSCSLAPKTWKRERPPPQCFTCGEMGHISTYCPK 625
>U20861-8|AAA62297.3| 372|Caenorhabditis elegans Hypothetical
protein C28H8.9a protein.
Length = 372
Score = 30.3 bits (65), Expect = 3.9
Identities = 21/72 (29%), Positives = 31/72 (43%)
Frame = +1
Query: 115 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRN 294
C C+GT + + D SC++C ++GH P N N T +SG
Sbjct: 257 CDFCSGTAFMNKNTKLPEDLVSCHDCGRSGH-----PSCLNFNQNVTKI-IKRSGWQCLE 310
Query: 295 CPDGTKTCYVCG 330
C K+C +CG
Sbjct: 311 C----KSCTICG 318
>U62281-1|AAD09363.1| 925|Caenorhabditis elegans lipoprotein
receptor precursor protein.
Length = 925
Score = 29.9 bits (64), Expect = 5.1
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Frame = +1
Query: 103 EADRCYRCNGTGHIARECAQSPDEPS-CYNCNKTGHIARNCPEGGRDNSNQTCYNC--NK 273
+AD + C+ G + C + E C N T + + CP G D+ ++ C C +
Sbjct: 253 QADHMHSCSAAGMYS--CGRKGSEIGVCIPMNATCNGIKECPLG--DDESKHCSECARKR 308
Query: 274 SGHISRNCPDGTKTCYVCGKPGHISRD---CDEE 366
H N P G + C +C + ++ D C++E
Sbjct: 309 CDHTCMNTPHGAR-C-ICQEGYKLADDGLTCEDE 340
>AF342986-1|AAL73338.1| 700|Caenorhabditis elegans KAL-1 protein.
Length = 700
Score = 29.9 bits (64), Expect = 5.1
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +1
Query: 148 RECAQSPDEPSCYN-CNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTKTC 318
+ C D +C + C+ I + P SNQ+ Y C+ + CP+ K C
Sbjct: 78 KSCVPRDDRETCEDSCHYLQRIYQEKPGACPSVSNQSNYECSALCQMDGECPETQKCC 135
>AC024794-1|AAK68497.1| 994|Caenorhabditis elegans Hypothetical
protein Y48G1BM.5 protein.
Length = 994
Score = 29.9 bits (64), Expect = 5.1
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = +1
Query: 220 CPEGGRDNSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDCDEERN*HAPNNS*Y 399
CP +D+ QTC + + R C + + C +C P HI+ +C ++ NS
Sbjct: 925 CPPCKKDHPLQTC--TMGAIEVKRFCINNGR-CTICSSPSHITGNCSYAQSMQDNTNS-- 979
Query: 400 FIINKNKQNN 429
I + +QN+
Sbjct: 980 -RIQRQRQNH 988
>Z81071-6|CAB03010.1| 464|Caenorhabditis elegans Hypothetical
protein F28F8.7 protein.
Length = 464
Score = 29.5 bits (63), Expect = 6.8
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 256 CYNCNKSGHISRNCPDGTKTCYVC 327
C NCNK+ PD TK C +C
Sbjct: 302 CQNCNKALKYYDPIPDDTKLCLIC 325
>AC084159-15|AAK39353.1| 418|Caenorhabditis elegans Hypothetical
protein Y73B3A.13 protein.
Length = 418
Score = 29.5 bits (63), Expect = 6.8
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 256 CYNCNKSGHISRNCPDGTKTCYVC 327
C NCNK+ PD TK C +C
Sbjct: 281 CQNCNKALKYYDPIPDDTKLCLIC 304
>U62639-1|AAD09364.1| 925|Caenorhabditis elegans lr protein.
Length = 925
Score = 29.1 bits (62), Expect = 9.0
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Frame = +1
Query: 103 EADRCYRCNGTGHIARECAQSPDEPS-CYNCNKTGHIARNCPEGGRDNSNQTCYNC--NK 273
+AD + C+ G + C E C N T + + CP G D+ ++ C C +
Sbjct: 253 QADHMHSCSAAGMYS--CGTKGSEIGVCIPMNATCNGIKECPLG--DDESKHCSECARKR 308
Query: 274 SGHISRNCPDGTKTCYVCGKPGHISRD---CDEE 366
H N P G + C +C + ++ D C++E
Sbjct: 309 CDHTCMNTPHGAR-C-ICQEGYKLADDGLTCEDE 340
>AL031630-5|CAA20985.1| 915|Caenorhabditis elegans Hypothetical
protein Y38H6C.5 protein.
Length = 915
Score = 29.1 bits (62), Expect = 9.0
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 316 CYVCGKPGHISRDCDEERN*HAPN 387
CY CGK GH + +C +++ + N
Sbjct: 411 CYYCGKRGHTANECRRKKSDESQN 434
>AF185706-1|AAD56241.1| 925|Caenorhabditis elegans yolk receptor
RME-2 protein.
Length = 925
Score = 29.1 bits (62), Expect = 9.0
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Frame = +1
Query: 103 EADRCYRCNGTGHIARECAQSPDEPS-CYNCNKTGHIARNCPEGGRDNSNQTCYNC--NK 273
+AD + C+ G + C E C N T + + CP G D+ ++ C C +
Sbjct: 253 QADHMHSCSAAGMYS--CGTKGSEIGVCIPMNATCNGIKECPLG--DDESKHCSECARKR 308
Query: 274 SGHISRNCPDGTKTCYVCGKPGHISRD---CDEE 366
H N P G + C +C + ++ D C++E
Sbjct: 309 CDHTCMNTPHGAR-C-ICQEGYKLADDGLTCEDE 340
>AF036703-1|AAB88554.3| 925|Caenorhabditis elegans Receptor
mediated endocytosis protein2 protein.
Length = 925
Score = 29.1 bits (62), Expect = 9.0
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Frame = +1
Query: 103 EADRCYRCNGTGHIARECAQSPDEPS-CYNCNKTGHIARNCPEGGRDNSNQTCYNC--NK 273
+AD + C+ G + C E C N T + + CP G D+ ++ C C +
Sbjct: 253 QADHMHSCSAAGMYS--CGTKGSEIGVCIPMNATCNGIKECPLG--DDESKHCSECARKR 308
Query: 274 SGHISRNCPDGTKTCYVCGKPGHISRD---CDEE 366
H N P G + C +C + ++ D C++E
Sbjct: 309 CDHTCMNTPHGAR-C-ICQEGYKLADDGLTCEDE 340
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,566,889
Number of Sequences: 27780
Number of extensions: 428234
Number of successful extensions: 1556
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 1200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1435
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4525199528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -