Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_A03_e497_01.seq
(1565 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 81 2e-15
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 80 5e-15
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 75 2e-13
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 73 7e-13
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 62 1e-09
At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein... 58 2e-08
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 56 8e-08
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 50 3e-06
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 50 3e-06
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 50 6e-06
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 50 6e-06
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 50 6e-06
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 49 1e-05
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein... 49 1e-05
At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein... 48 2e-05
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 44 3e-04
At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein... 39 0.008
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 35 0.17
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 34 0.22
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 34 0.29
At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein... 33 0.51
At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak sim... 33 0.51
At5g51300.2 68418.m06360 splicing factor-related contains simila... 33 0.68
At5g51300.1 68418.m06359 splicing factor-related contains simila... 33 0.68
At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar ... 33 0.68
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 33 0.68
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 33 0.68
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 33 0.68
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 32 0.90
At3g31950.1 68416.m04046 hypothetical protein 32 0.90
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein... 32 1.2
At5g47430.1 68418.m05844 expressed protein 31 1.6
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ... 31 1.6
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein... 31 2.1
At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein... 31 2.1
At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein... 31 2.7
At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s... 30 3.6
At4g19130.1 68417.m02823 replication protein-related similar to ... 30 3.6
At4g06479.1 68417.m00885 hypothetical protein 30 4.8
At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein... 30 4.8
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 30 4.8
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 30 4.8
At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PS... 29 6.3
At4g39960.1 68417.m05660 DNAJ heat shock family protein similar ... 29 6.3
At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein... 29 6.3
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 29 6.3
At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PS... 29 6.3
At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PS... 29 6.3
At5g02070.1 68418.m00128 protein kinase-related contains eukaryo... 29 8.3
At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein... 29 8.3
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 29 8.3
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 81.0 bits (191), Expect = 2e-15
Identities = 41/121 (33%), Positives = 57/121 (47%), Gaps = 20/121 (16%)
Frame = +1
Query: 55 GSAGNSARGLRATARXEADRCYRCNGTGHIARECAQSPDE------PSCYNCNKTGHIAR 216
G +G + G D CY C G GH AR+C Q+ +CY C GHIA+
Sbjct: 178 GGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAK 237
Query: 217 NC----PEGGRDNSNQTCYNCNKSGHISRNCP----------DGTKTCYVCGKPGHISRD 354
C P GG + CY C +GH++R+C G+ C++CGK GH +R+
Sbjct: 238 VCTSKIPSGG-GGGGRACYECGGTGHLARDCDRRGSGSSGGGGGSNKCFICGKEGHFARE 296
Query: 355 C 357
C
Sbjct: 297 C 297
Score = 72.1 bits (169), Expect = 9e-13
Identities = 43/128 (33%), Positives = 54/128 (42%), Gaps = 27/128 (21%)
Frame = +1
Query: 55 GSAGNSARGLRATARXEADRCYRCNGTGHIARECAQSPDEPS---------CYNCNKTGH 207
GS G S G CY C GH AR+C QS S CY+C + GH
Sbjct: 112 GSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGH 171
Query: 208 IARNC----------PEGGRDNSNQTCYNCNKSGHISRNCPD--------GTKTCYVCGK 333
+A++C GGR + CY C GH +R+C G TCY CG
Sbjct: 172 LAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGG 231
Query: 334 PGHISRDC 357
GHI++ C
Sbjct: 232 VGHIAKVC 239
Score = 70.9 bits (166), Expect = 2e-12
Identities = 36/106 (33%), Positives = 47/106 (44%), Gaps = 24/106 (22%)
Frame = +1
Query: 115 CYRCNGTGHIAREC-------------AQSPDEPSCYNCNKTGHIARNCPEGGRDN---S 246
CY C GH+A++C + CY C GH AR+C + G N
Sbjct: 163 CYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDCRQNGGGNVGGG 222
Query: 247 NQTCYNCNKSGHISRNCPD--------GTKTCYVCGKPGHISRDCD 360
TCY C GHI++ C G + CY CG GH++RDCD
Sbjct: 223 GSTCYTCGGVGHIAKVCTSKIPSGGGGGGRACYECGGTGHLARDCD 268
Score = 67.3 bits (157), Expect = 3e-11
Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 35/140 (25%)
Frame = +1
Query: 43 VXSPGSAGNSARGLRATARXEADRCYRCNGTGHIAREC--------------AQSPDEPS 180
V +PG G S ++R C+ C GH+A++C +S E
Sbjct: 74 VTAPG--GGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGE 131
Query: 181 CYNCNKTGHIARNCPEGGRDNS------NQTCYNCNKSGHISRNCPDGT----------- 309
CY C GH AR+C + G NS + CY+C + GH++++C G+
Sbjct: 132 CYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGR 191
Query: 310 ----KTCYVCGKPGHISRDC 357
CY+CG GH +RDC
Sbjct: 192 GSGGDGCYMCGGVGHFARDC 211
Score = 29.1 bits (62), Expect = 8.3
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +1
Query: 316 CYVCGKPGHISRDCD 360
C+ CG+ GH+++DCD
Sbjct: 96 CFNCGEVGHMAKDCD 110
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 79.8 bits (188), Expect = 5e-15
Identities = 44/124 (35%), Positives = 59/124 (47%), Gaps = 22/124 (17%)
Frame = +1
Query: 58 SAGNSARGLRATARXEADRCYRCNGTGHIARECAQSP------------DEPSCYNCNKT 201
SAGN + R + D CY C GH+AR+C Q CY C
Sbjct: 149 SAGNGDQ--RGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDV 206
Query: 202 GHIARNCPE---GGRDNS----NQTCYNCNKSGHISRNCP---DGTKTCYVCGKPGHISR 351
GH AR+C + G S + TCY+C GHI+R+C ++ CY CG GH++R
Sbjct: 207 GHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCGGSGHLAR 266
Query: 352 DCDE 363
DCD+
Sbjct: 267 DCDQ 270
Score = 76.6 bits (180), Expect = 4e-14
Identities = 40/117 (34%), Positives = 54/117 (46%), Gaps = 17/117 (14%)
Frame = +1
Query: 58 SAGNSARGLRATARXEADRCYRCNGTGHIARECAQSP----------DEPSCYNCNKTGH 207
S GN + R + D CY C GH AR+C Q +CY+C GH
Sbjct: 183 SVGNGDQ--RGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGH 240
Query: 208 IARNCPEGGRDNSNQTCYNCNKSGHISRNCPD-------GTKTCYVCGKPGHISRDC 357
IAR+C + ++ CY C SGH++R+C CY CGK GH +R+C
Sbjct: 241 IARDCAT--KRQPSRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHFAREC 295
Score = 73.7 bits (173), Expect = 3e-13
Identities = 44/143 (30%), Positives = 59/143 (41%), Gaps = 35/143 (24%)
Frame = +1
Query: 43 VXSPGSAG----NSARGLRATARXEADRCYRCNGTGHIARECA----------QSPDEPS 180
V +PG N++RG A CY C GHI+++C +S
Sbjct: 74 VTAPGGGSLKKENNSRGNGARRGGGGSGCYNCGELGHISKDCGIGGGGGGGERRSRGGEG 133
Query: 181 CYNCNKTGHIARNCPEGGRDN-------SNQTCYNCNKSGHISRNCPD------------ 303
CYNC TGH AR+C G + N CY C GH++R+C
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAV 193
Query: 304 --GTKTCYVCGKPGHISRDCDEE 366
G CY CG GH +RDC ++
Sbjct: 194 KGGNDGCYTCGDVGHFARDCTQK 216
Score = 73.3 bits (172), Expect = 4e-13
Identities = 44/136 (32%), Positives = 56/136 (41%), Gaps = 31/136 (22%)
Frame = +1
Query: 55 GSAGNSARGLRATARXEADRCYRCNGTGHIARECAQSPD----------EPSCYNCNKTG 204
G G G R + E CY C TGH AR+C + + CY C G
Sbjct: 116 GIGGGGGGGERRSRGGEG--CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVG 173
Query: 205 HIARNCPE---------GGRDNSNQTCYNCNKSGHISRNCPD------------GTKTCY 321
H+AR+C + G N CY C GH +R+C G+ TCY
Sbjct: 174 HVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCY 233
Query: 322 VCGKPGHISRDCDEER 369
CG GHI+RDC +R
Sbjct: 234 SCGGVGHIARDCATKR 249
Score = 56.4 bits (130), Expect = 5e-08
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Frame = +1
Query: 49 SPGSAGNSARGLRATARXEADRCYRCNGTGHIARECAQ-----SPDEPSCYNCNKTGHIA 213
S G G+ AR AT R + CY+C G+GH+AR+C Q ++ +CY C K GH A
Sbjct: 234 SCGGVGHIARDC-ATKRQPSRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHFA 292
Query: 214 RNC 222
R C
Sbjct: 293 REC 295
Score = 42.7 bits (96), Expect = 6e-04
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 12/58 (20%)
Frame = +1
Query: 235 RDNSNQTCYNCNKSGHISRNC------------PDGTKTCYVCGKPGHISRDCDEERN 372
R CYNC + GHIS++C G + CY CG GH +RDC N
Sbjct: 95 RGGGGSGCYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGN 152
Score = 29.1 bits (62), Expect = 8.3
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 115 CYRCNGTGHIARECA 159
CY+C GH AREC+
Sbjct: 282 CYKCGKEGHFARECS 296
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 74.5 bits (175), Expect = 2e-13
Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Frame = +1
Query: 112 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEG-GRDNSNQTCYNCNKSGHIS 288
RC+ C GH+A C+ +E C++C K+GH AR+C R + C NC K GH++
Sbjct: 94 RCWNCREPGHVASNCS---NEGICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLA 150
Query: 289 RNCPDGTKTCYVCGKPGHISRDC 357
+C + K C C GHI+RDC
Sbjct: 151 ADCTN-DKACKNCRTSGHIARDC 172
Score = 69.7 bits (163), Expect = 5e-12
Identities = 33/88 (37%), Positives = 44/88 (50%)
Frame = +1
Query: 94 ARXEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNK 273
A + + C C GH AR+C+ + C NC GHIA C R C+NC +
Sbjct: 50 AFSQGNLCNNCKRPGHFARDCS---NVSVCNNCGLPGHIAAECTAESR------CWNCRE 100
Query: 274 SGHISRNCPDGTKTCYVCGKPGHISRDC 357
GH++ NC C+ CGK GH +RDC
Sbjct: 101 PGHVASNC-SNEGICHSCGKSGHRARDC 127
Score = 68.1 bits (159), Expect = 1e-11
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Frame = +1
Query: 115 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRN 294
C C GHIA EC E C+NC + GH+A NC G C++C KSGH +R+
Sbjct: 76 CNNCGLPGHIAAECTA---ESRCWNCREPGHVASNCSNEG------ICHSCGKSGHRARD 126
Query: 295 CPDG------TKTCYVCGKPGHISRDCDEER 369
C + + C C K GH++ DC ++
Sbjct: 127 CSNSDSRAGDLRLCNNCFKQGHLAADCTNDK 157
Score = 57.2 bits (132), Expect = 3e-08
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Frame = +1
Query: 49 SPGSAGNSARGLRATARXEADR--CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 222
S G +G+ AR + D C C GH+A +C ++ +C NC +GHIAR+C
Sbjct: 116 SCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADCT---NDKACKNCRTSGHIARDC 172
Query: 223 PEGGRDNSNQTCYNCNKSGHISRNCPDG 306
++ C C+ SGH++R+CP G
Sbjct: 173 ------RNDPVCNICSISGHVARHCPKG 194
Score = 54.0 bits (124), Expect = 3e-07
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Frame = +1
Query: 115 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG---RDNSNQTCYNCNKSGHI 285
C C +GHIAR+C ++P C C+ +GH+AR+CP+G D ++ + G +
Sbjct: 159 CKNCRTSGHIARDCR---NDPVCNICSISGHVARHCPKGDSNYSDRGSRVRDGGMQRGGL 215
Query: 286 SRNCPD--GTKT---CYVCGKPGHISRDCDEER 369
SR D G C+ CG GH + +C R
Sbjct: 216 SRMSRDREGVSAMIICHNCGGRGHRAYECPSAR 248
Score = 53.6 bits (123), Expect = 3e-07
Identities = 24/71 (33%), Positives = 37/71 (52%)
Frame = +1
Query: 181 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDCD 360
C NC + GH AR+C ++ C NC GHI+ C ++ C+ C +PGH++ +C
Sbjct: 57 CNNCKRPGHFARDC------SNVSVCNNCGLPGHIAAECTAESR-CWNCREPGHVASNCS 109
Query: 361 EERN*HAPNNS 393
E H+ S
Sbjct: 110 NEGICHSCGKS 120
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 72.5 bits (170), Expect = 7e-13
Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 13/99 (13%)
Frame = +1
Query: 115 CYRCNGTGHIARECAQSPDEPS----CYNCNKTGHIARNCPEGGRDNSNQ--TCYNCNKS 276
C +C GH + C + +E S CYNC TGH +CP D + +C+ C
Sbjct: 101 CLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDTGHSLSHCPYPMEDGGTKFASCFICKGQ 160
Query: 277 GHISRNCPDGTK-------TCYVCGKPGHISRDCDEERN 372
GHIS+NCP+ C VCG H+ +DC ++ N
Sbjct: 161 GHISKNCPENKHGIYPMGGCCKVCGSVAHLVKDCPDKFN 199
Score = 59.3 bits (137), Expect = 7e-09
Identities = 29/83 (34%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Frame = +1
Query: 127 NGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDG 306
+ T H R P E C+ C+ HIA+ CPE N+ C C + GH +NCP+
Sbjct: 59 SSTRHPLRVPGMKPGE-GCFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEK 117
Query: 307 T------KTCYVCGKPGHISRDC 357
K CY CG GH C
Sbjct: 118 NNESSEKKLCYNCGDTGHSLSHC 140
Score = 52.4 bits (120), Expect = 8e-07
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Frame = +1
Query: 103 EADRCYRCNGTGHIARECAQSPDE-----PSCYNCNKTGHIARNCPEG--GRDNSNQTCY 261
E CY C TGH C ++ SC+ C GHI++NCPE G C
Sbjct: 123 EKKLCYNCGDTGHSLSHCPYPMEDGGTKFASCFICKGQGHISKNCPENKHGIYPMGGCCK 182
Query: 262 NCNKSGHISRNCPD 303
C H+ ++CPD
Sbjct: 183 VCGSVAHLVKDCPD 196
Score = 35.1 bits (77), Expect = 0.13
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = +1
Query: 256 CYNCNKSGHISRNCPDGT-----KTCYVCGKPGHISRDCDEERN 372
C+ C+ HI++ CP+ + K C C + GH ++C E+ N
Sbjct: 76 CFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNN 119
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 61.7 bits (143), Expect = 1e-09
Identities = 42/117 (35%), Positives = 51/117 (43%), Gaps = 36/117 (30%)
Frame = +1
Query: 115 CYRCNGTGHIARECA-QSPDEP--------SCYNCNKTGHIARNCP--------EGGRDN 243
CY+C GH AR+C QS P C+ C K GH +R+C E G+
Sbjct: 239 CYKCGKEGHWARDCTVQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMK 298
Query: 244 SNQT---CYNCNKSGHISRNCP----------------DGTKTCYVCGKPGHISRDC 357
S+ + CY C K GH SR+C T CY CGK GH SRDC
Sbjct: 299 SSSSSGECYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDCYKCGKAGHWSRDC 355
Score = 47.2 bits (107), Expect = 3e-05
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 12/73 (16%)
Frame = +1
Query: 175 PSCYNCNKTGHIARNCPEGGRDNSNQT-CYNCNKSGHISRNCPDGTKT-----------C 318
P+ Y+ K + + G ++ T CY C K GH +R+C + T C
Sbjct: 211 PTSYSVTKNSNFGDSDTRGYQNAKTGTPCYKCGKEGHWARDCTVQSDTGPVKSTSAAGDC 270
Query: 319 YVCGKPGHISRDC 357
+ CGKPGH SRDC
Sbjct: 271 FKCGKPGHWSRDC 283
>At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 254
Score = 58.0 bits (134), Expect = 2e-08
Identities = 31/96 (32%), Positives = 40/96 (41%), Gaps = 11/96 (11%)
Frame = +1
Query: 103 EADRCYRCNGTGHIARECAQSPDEPS-----CYNCNKTGHIARNCPEGGRDNS-NQTCYN 264
EA+ C RC G GH C CY CN GH+ C E G S +CY
Sbjct: 24 EAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHLC--CIEPGHTQSWTVSCYR 81
Query: 265 CNKSGHISRNC-----PDGTKTCYVCGKPGHISRDC 357
C + GH C + +C++CG+ GH C
Sbjct: 82 CGQLGHTGLACGRHYDDSVSPSCFICGREGHFEHQC 117
Score = 51.6 bits (118), Expect = 1e-06
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Frame = +1
Query: 112 RCYRCNGTGHIARECAQSPDEP-----SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKS 276
+CY CN GH+ C P SCY C + GH C D+ + +C+ C +
Sbjct: 54 KCYVCNSLGHL---CCIEPGHTQSWTVSCYRCGQLGHTGLACGRHYDDSVSPSCFICGRE 110
Query: 277 GHISRNCPDGTKTCY 321
GH C + C+
Sbjct: 111 GHFEHQCHNSFSVCF 125
Score = 36.3 bits (80), Expect = 0.055
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Frame = +1
Query: 136 GHIARECAQSPDEPS-CYN--CNKTGHIARNCPEGGRDNSNQT---CYNCNKSGHISRNC 297
GH +C PD S C+ + G I+ N +T CY C GHI+R+C
Sbjct: 154 GHFEHQC---PDSSSVCFQEISREEGFISLNSSSKSTSKGRETRRLCYECKGKGHIARDC 210
Query: 298 PDGTK 312
P+ ++
Sbjct: 211 PNSSQ 215
Score = 33.9 bits (74), Expect = 0.29
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 67 NSARGLRATARXEADRCYRCNGTGHIARECAQS 165
NS+ + R CY C G GHIAR+C S
Sbjct: 181 NSSSKSTSKGRETRRLCYECKGKGHIARDCPNS 213
Score = 31.5 bits (68), Expect = 1.6
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
Frame = +1
Query: 151 ECAQSPDEPSCYNCNKT-----GHIARNCPEGG----RDNSNQTCY-NCNKSGHISRNCP 300
EC Q PD S T GH CP+ ++ S + + + N S +
Sbjct: 133 EC-QGPDSSSVRFQENTREEEEGHFEHQCPDSSSVCFQEISREEGFISLNSSSKSTSKGR 191
Query: 301 DGTKTCYVCGKPGHISRDC 357
+ + CY C GHI+RDC
Sbjct: 192 ETRRLCYECKGKGHIARDC 210
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 55.6 bits (128), Expect = 8e-08
Identities = 22/63 (34%), Positives = 35/63 (55%)
Frame = +1
Query: 178 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDC 357
SCY+C + GH + NCP + + C+ C H ++ C G CY+C K GH ++DC
Sbjct: 167 SCYSCGEQGHTSFNCPTPTK--RRKPCFICGSLEHGAKQCSKG-HDCYICKKTGHRAKDC 223
Query: 358 DEE 366
++
Sbjct: 224 PDK 226
Score = 52.8 bits (121), Expect = 6e-07
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Frame = +1
Query: 115 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDNS-NQTCYNCNKSGHISR 291
C+ C H A++C++ D CY C KTGH A++CP+ ++ S C C GH
Sbjct: 191 CFICGSLEHGAKQCSKGHD---CYICKKTGHRAKDCPDKYKNGSKGAVCLRCGDFGHDMI 247
Query: 292 NCP-DGTK------TCYVCGKPGHI 345
C + +K CY+C GH+
Sbjct: 248 LCKYEYSKEDLKDVQCYICKSFGHL 272
Score = 52.8 bits (121), Expect = 6e-07
Identities = 30/91 (32%), Positives = 39/91 (42%), Gaps = 25/91 (27%)
Frame = +1
Query: 115 CYRCNGTGHIARECAQSPDEPS------------------CYNCNKTGHIARNCPEG--- 231
CYRC GH C + +E + CY C + GH AR CP
Sbjct: 287 CYRCGQLGHSGLACGRHYEESNENDSATPERLFNSREASECYRCGEEGHFARECPNSSSI 346
Query: 232 ----GRDNSNQTCYNCNKSGHISRNCPDGTK 312
GR+ S CY CN SGH +R CP+ ++
Sbjct: 347 STSHGRE-SQTLCYRCNGSGHFARECPNSSQ 376
Score = 52.0 bits (119), Expect = 1e-06
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Frame = +1
Query: 115 CYRCNGTGHIAREC-AQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISR 291
CY C GH + C + C+ C H A+ C +G CY C K+GH ++
Sbjct: 168 CYSCGEQGHTSFNCPTPTKRRKPCFICGSLEHGAKQCSKG------HDCYICKKTGHRAK 221
Query: 292 NCPD----GTK--TCYVCGKPGH 342
+CPD G+K C CG GH
Sbjct: 222 DCPDKYKNGSKGAVCLRCGDFGH 244
Score = 51.6 bits (118), Expect = 1e-06
Identities = 26/66 (39%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Frame = +1
Query: 67 NSARGLRATARXEADRCYRCNGTGHIARECAQS---------PDEPSCYNCNKTGHIARN 219
+SA R EA CYRC GH AREC S + CY CN +GH AR
Sbjct: 311 DSATPERLFNSREASECYRCGEEGHFARECPNSSSISTSHGRESQTLCYRCNGSGHFARE 370
Query: 220 CPEGGR 237
CP +
Sbjct: 371 CPNSSQ 376
Score = 48.0 bits (109), Expect = 2e-05
Identities = 32/113 (28%), Positives = 43/113 (38%), Gaps = 31/113 (27%)
Frame = +1
Query: 112 RCYRCNGTGHIARECAQSPDEP-----SCYNCNKTGHIARNCP---EGGRDNSNQT---- 255
+CY C GH+ C P SCY C + GH C E +N + T
Sbjct: 262 QCYICKSFGHL---CCVEPGNSLSWAVSCYRCGQLGHSGLACGRHYEESNENDSATPERL 318
Query: 256 --------CYNCNKSGHISRNCPDGTKT-----------CYVCGKPGHISRDC 357
CY C + GH +R CP+ + CY C GH +R+C
Sbjct: 319 FNSREASECYRCGEEGHFARECPNSSSISTSHGRESQTLCYRCNGSGHFAREC 371
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 50.4 bits (115), Expect = 3e-06
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 9/62 (14%)
Frame = +1
Query: 199 TGHIARNCPEGGRDNSNQ-------TCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 351
T +R P G RDN ++ C+NC GH +R+C G CY CG+ GHI R
Sbjct: 75 TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 134
Query: 352 DC 357
+C
Sbjct: 135 NC 136
Score = 48.4 bits (110), Expect = 1e-05
Identities = 22/56 (39%), Positives = 28/56 (50%)
Frame = +1
Query: 55 GSAGNSARGLRATARXEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 222
GS N +RG + RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 85 GSRDNGSRG----PPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 136
Score = 48.4 bits (110), Expect = 1e-05
Identities = 20/44 (45%), Positives = 23/44 (52%)
Frame = +1
Query: 166 PDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNC 297
P C+NC GH AR+C G N CY C + GHI RNC
Sbjct: 96 PGSGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNC 136
Score = 33.9 bits (74), Expect = 0.29
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = +1
Query: 55 GSAGNSARGLRATARXEADRCYRCNGTGHIARECAQSP 168
G G+ AR TA ++CYRC GHI R C SP
Sbjct: 105 GVDGHWARD--CTAGDWKNKCYRCGERGHIERNCKNSP 140
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 50.4 bits (115), Expect = 3e-06
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 9/62 (14%)
Frame = +1
Query: 199 TGHIARNCPEGGRDNSNQ-------TCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 351
T +R P G RDN ++ C+NC GH +R+C G CY CG+ GHI R
Sbjct: 34 TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 93
Query: 352 DC 357
+C
Sbjct: 94 NC 95
Score = 48.4 bits (110), Expect = 1e-05
Identities = 22/56 (39%), Positives = 28/56 (50%)
Frame = +1
Query: 55 GSAGNSARGLRATARXEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 222
GS N +RG + RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 44 GSRDNGSRG----PPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 95
Score = 48.4 bits (110), Expect = 1e-05
Identities = 20/44 (45%), Positives = 23/44 (52%)
Frame = +1
Query: 166 PDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNC 297
P C+NC GH AR+C G N CY C + GHI RNC
Sbjct: 55 PGSGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNC 95
Score = 33.9 bits (74), Expect = 0.29
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = +1
Query: 55 GSAGNSARGLRATARXEADRCYRCNGTGHIARECAQSP 168
G G+ AR TA ++CYRC GHI R C SP
Sbjct: 64 GVDGHWARD--CTAGDWKNKCYRCGERGHIERNCKNSP 99
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 49.6 bits (113), Expect = 6e-06
Identities = 21/49 (42%), Positives = 25/49 (51%)
Frame = +1
Query: 166 PDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTK 312
P C+NC GH AR+C G N CY C + GHI RNC + K
Sbjct: 55 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 100
Score = 48.8 bits (111), Expect = 1e-05
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +1
Query: 106 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 222
A RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 57 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 95
Score = 47.2 bits (107), Expect = 3e-05
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Frame = +1
Query: 199 TGHIARNCPEGGRDNSNQ-------TCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 351
T +R P G RD ++ C+NC GH +R+C G CY CG+ GHI R
Sbjct: 34 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 93
Query: 352 DC 357
+C
Sbjct: 94 NC 95
Score = 33.9 bits (74), Expect = 0.29
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = +1
Query: 55 GSAGNSARGLRATARXEADRCYRCNGTGHIARECAQSP 168
G G+ AR TA ++CYRC GHI R C SP
Sbjct: 64 GVDGHWARD--CTAGDWKNKCYRCGERGHIERNCKNSP 99
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 49.6 bits (113), Expect = 6e-06
Identities = 21/49 (42%), Positives = 25/49 (51%)
Frame = +1
Query: 166 PDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTK 312
P C+NC GH AR+C G N CY C + GHI RNC + K
Sbjct: 66 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 111
Score = 48.8 bits (111), Expect = 1e-05
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +1
Query: 106 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 222
A RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 68 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 106
Score = 47.2 bits (107), Expect = 3e-05
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Frame = +1
Query: 199 TGHIARNCPEGGRDNSNQ-------TCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 351
T +R P G RD ++ C+NC GH +R+C G CY CG+ GHI R
Sbjct: 45 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 104
Query: 352 DC 357
+C
Sbjct: 105 NC 106
Score = 33.9 bits (74), Expect = 0.29
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = +1
Query: 55 GSAGNSARGLRATARXEADRCYRCNGTGHIARECAQSP 168
G G+ AR TA ++CYRC GHI R C SP
Sbjct: 75 GVDGHWARD--CTAGDWKNKCYRCGERGHIERNCKNSP 110
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 49.6 bits (113), Expect = 6e-06
Identities = 21/49 (42%), Positives = 25/49 (51%)
Frame = +1
Query: 166 PDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTK 312
P C+NC GH AR+C G N CY C + GHI RNC + K
Sbjct: 96 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 141
Score = 48.8 bits (111), Expect = 1e-05
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +1
Query: 106 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 222
A RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 98 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 136
Score = 47.2 bits (107), Expect = 3e-05
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Frame = +1
Query: 199 TGHIARNCPEGGRDNSNQ-------TCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 351
T +R P G RD ++ C+NC GH +R+C G CY CG+ GHI R
Sbjct: 75 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 134
Query: 352 DC 357
+C
Sbjct: 135 NC 136
Score = 33.9 bits (74), Expect = 0.29
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = +1
Query: 55 GSAGNSARGLRATARXEADRCYRCNGTGHIARECAQSP 168
G G+ AR TA ++CYRC GHI R C SP
Sbjct: 105 GVDGHWARD--CTAGDWKNKCYRCGERGHIERNCKNSP 140
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 48.8 bits (111), Expect = 1e-05
Identities = 26/84 (30%), Positives = 39/84 (46%)
Frame = +1
Query: 55 GSAGNSARGLRATARXEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 234
G G G R + + C++C GH+AREC+Q Y+ G + GG
Sbjct: 119 GGYGGRGSGGRGGGGGD-NSCFKCGEPGHMARECSQGGGG---YSGGGGGGRYGSGGGGG 174
Query: 235 RDNSNQTCYNCNKSGHISRNCPDG 306
+CY+C +SGH +R+C G
Sbjct: 175 GGGGGLSCYSCGESGHFARDCTSG 198
Score = 48.0 bits (109), Expect = 2e-05
Identities = 23/60 (38%), Positives = 30/60 (50%)
Frame = +1
Query: 178 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDC 357
SC+ C + GH+AR C +GG S SG G +CY CG+ GH +RDC
Sbjct: 137 SCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGG-GGGGGGGGLSCYSCGESGHFARDC 195
Score = 33.5 bits (73), Expect = 0.39
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +1
Query: 304 GTKTCYVCGKPGHISRDCDE 363
G +C+ CG+PGH++R+C +
Sbjct: 134 GDNSCFKCGEPGHMARECSQ 153
>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 119
Score = 48.8 bits (111), Expect = 1e-05
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Frame = +1
Query: 169 DEPSCYNCNKTGHIARNCPEGGRDNSNQ-TCYNCNKSGHISRNCPDGTKT-------CYV 324
D +CY C K GH AR+C + + TCY C++ GH S CP+ CY
Sbjct: 32 DPRACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYW 91
Query: 325 CGKPGH 342
CG H
Sbjct: 92 CGNQDH 97
Score = 45.6 bits (103), Expect = 9e-05
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Frame = +1
Query: 115 CYRCNGTGHIAREC--AQSPDEP--SCYNCNKTGHIARNCPEGGRDNSNQT--CYNCNKS 276
CY+C GH AR C P +CY C++ GH + CP D N CY C
Sbjct: 36 CYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYWCGNQ 95
Query: 277 GH 282
H
Sbjct: 96 DH 97
Score = 42.7 bits (96), Expect = 6e-04
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Frame = +1
Query: 238 DNSNQTCYNCNKSGHISRNCPDGTK------TCYVCGKPGHISRDCDEERN*HA-PNNS* 396
D + CY C K GH +R+C T+ TCY C + GH S C +R P
Sbjct: 30 DYDPRACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHC 89
Query: 397 YFIINKNKQNN 429
Y+ N++ + N
Sbjct: 90 YWCGNQDHRFN 100
>At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 393
Score = 47.6 bits (108), Expect = 2e-05
Identities = 33/114 (28%), Positives = 46/114 (40%), Gaps = 14/114 (12%)
Frame = +1
Query: 58 SAGNSARGLRATAR--XEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEG 231
+A A+G A + E+ + + N R + + C NC + GH CPE
Sbjct: 223 AAIKKAKGTPAARKHASESMKAFFSNPVNREQRSLSMKGTKFYCKNCGQEGHRRHYCPEL 282
Query: 232 GRDNSNQ-TCYNCNKSGHISRNCP-------DGTKT----CYVCGKPGHISRDC 357
G + + C C GH R CP G T C +CG+ GH SR C
Sbjct: 283 GTNADRKFRCRGCGGKGHNRRTCPKSKSIVTKGISTRYHKCGICGERGHNSRTC 336
Score = 33.5 bits (73), Expect = 0.39
Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 9/95 (9%)
Frame = +1
Query: 112 RCYRCNGTGHIARECAQSPDEPS---------CYNCNKTGHIARNCPEGGRDNSNQTCYN 264
RC C G GH R C +S + C C + GH +R C + N + + N
Sbjct: 291 RCRGCGGKGHNRRTCPKSKSIVTKGISTRYHKCGICGERGHNSRTCRKPTGVNPSCSGEN 350
Query: 265 CNKSGHISRNCPDGTKTCYVCGKPGHISRDCDEER 369
+ G + + T C C K GH R C ++
Sbjct: 351 SGEDG-VGKI----TYACGFCKKMGHNVRTCPSKQ 380
Score = 33.1 bits (72), Expect = 0.51
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Frame = +1
Query: 256 CYNCNKSGHISRNCPD-GTKT-----CYVCGKPGHISRDCDEERN 372
C NC + GH CP+ GT C CG GH R C + ++
Sbjct: 266 CKNCGQEGHRRHYCPELGTNADRKFRCRGCGGKGHNRRTCPKSKS 310
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 44.0 bits (99), Expect = 3e-04
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Frame = +1
Query: 181 CYNCNKTGHIARNCPEGGRDNSNQTC-------YNCNKSGHIS--RNCPDGTKTCYVCGK 333
CY C + GH+AR+C EGG Y G+ R G +CY CG+
Sbjct: 131 CYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSCGE 190
Query: 334 PGHISRDC 357
GH +RDC
Sbjct: 191 SGHFARDC 198
Score = 41.1 bits (92), Expect = 0.002
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
Frame = +1
Query: 55 GSAGNSARGLRATARXEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 234
G G G R +D CY+C GH+AR+C++ G GG
Sbjct: 112 GGGGGGYGGRGGGGRGGSD-CYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGG 170
Query: 235 RDNSNQ-------TCYNCNKSGHISRNCPDG 306
+ +CY+C +SGH +R+C G
Sbjct: 171 YGGGGRGGGGGGGSCYSCGESGHFARDCTSG 201
Score = 36.7 bits (81), Expect = 0.042
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 304 GTKTCYVCGKPGHISRDCDE 363
G CY CG+PGH++RDC E
Sbjct: 127 GGSDCYKCGEPGHMARDCSE 146
Score = 36.7 bits (81), Expect = 0.042
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +1
Query: 178 SCYNCNKTGHIARNCPEGGR 237
SCY+C ++GH AR+C GGR
Sbjct: 184 SCYSCGESGHFARDCTSGGR 203
>At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 260
Score = 39.1 bits (87), Expect = 0.008
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = +1
Query: 253 TCYNCNKSGHISRNCPDGT---KTCYVCGKPGHISRDC 357
TCY+C + HI+ +CP T K+C++C H +R C
Sbjct: 144 TCYSCGEKDHITVSCPTLTNCRKSCFICASLEHGARQC 181
Score = 33.5 bits (73), Expect = 0.39
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 178 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNC 297
+CY+C + HI +CP N ++C+ C H +R C
Sbjct: 144 TCYSCGEKDHITVSCPT--LTNCRKSCFICASLEHGARQC 181
Score = 30.7 bits (66), Expect = 2.7
Identities = 19/79 (24%), Positives = 25/79 (31%)
Frame = +1
Query: 121 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCP 300
+ I C + DE N + R E G SN +
Sbjct: 85 KLEAANEIVTHCVERQDED-----NMVEDVVRGEEEDGETTSNSVMTKLLRGARYFDPLD 139
Query: 301 DGTKTCYVCGKPGHISRDC 357
G TCY CG+ HI+ C
Sbjct: 140 AGWVTCYSCGEKDHITVSC 158
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 34.7 bits (76), Expect = 0.17
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = +1
Query: 226 EGGRDNSNQTCYNCNKSGHISRNCPDGTK---TCYVCGKPGHISRDCDEE 366
+GG N ++ R+ P G + C+ CGKPGH +R+C E
Sbjct: 87 QGGAGRDNDGDRGRDRGYDRDRSRPSGGRGGGDCFKCGKPGHFARECPSE 136
Score = 32.3 bits (70), Expect = 0.90
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = +1
Query: 181 CYNCNKTGHIARNCP-EGGRDNSNQ 252
C+ C K GH AR CP E RD +
Sbjct: 120 CFKCGKPGHFARECPSESSRDGGGR 144
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 34.3 bits (75), Expect = 0.22
Identities = 24/85 (28%), Positives = 38/85 (44%)
Frame = +1
Query: 49 SPGSAGNSARGLRATARXEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPE 228
S G G S+RG R + + DR R + G + S S + G + +
Sbjct: 660 SRGGRGGSSRG-RDSWGGDDDRGSRRSSGGGSSWSRGGSSSRGSSDDWLIGGRSSSSSRA 718
Query: 229 GGRDNSNQTCYNCNKSGHISRNCPD 303
R++ +C+ C KSGH + +CPD
Sbjct: 719 PSRESFGGSCFICGKSGHRATDCPD 743
Score = 31.5 bits (68), Expect = 1.6
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +1
Query: 313 TCYVCGKPGHISRDCDEER 369
+C++CGK GH + DC ++R
Sbjct: 727 SCFICGKSGHRATDCPDKR 745
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 33.9 bits (74), Expect = 0.29
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 229 GGRDNSNQTCYNCNKSGHISRNC 297
GGR S+ CY C ++GH +R C
Sbjct: 92 GGRGGSDLKCYECGETGHFAREC 114
Score = 31.1 bits (67), Expect = 2.1
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 112 RCYRCNGTGHIAREC 156
+CY C TGH AREC
Sbjct: 100 KCYECGETGHFAREC 114
Score = 30.3 bits (65), Expect = 3.6
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 181 CYNCNKTGHIARNCPEGG 234
CY C +TGH AR C G
Sbjct: 101 CYECGETGHFARECRNRG 118
>At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 1080
Score = 33.1 bits (72), Expect = 0.51
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 286 SRNCPDGTKTCYVCGKPGHISRDC 357
S D K CY C K GH++RDC
Sbjct: 916 SEETDDAVKICYRCKKVGHLARDC 939
Score = 31.1 bits (67), Expect = 2.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 223 PEGGRDNSNQTCYNCNKSGHISRNC 297
P D++ + CY C K GH++R+C
Sbjct: 915 PSEETDDAVKICYRCKKVGHLARDC 939
Score = 30.3 bits (65), Expect = 3.6
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 181 CYNCNKTGHIARNC 222
CY C K GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
Score = 29.9 bits (64), Expect = 4.8
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 115 CYRCNGTGHIAREC 156
CYRC GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
>At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak
similarity to Chaperone protein dnaJ (Swiss-Prot:Q9ZFC5)
[Methylovorus sp.]
Length = 419
Score = 33.1 bits (72), Expect = 0.51
Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 7/86 (8%)
Frame = +1
Query: 109 DRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEG---GRDNSNQTCYNCNKSG 279
++C C G G + + EP Y N+ + G +D S+ C NCN G
Sbjct: 199 EKCTGCTGRGDVVCPTCNADGEPGFYKENQMMKCSTCYGRGLVAHKDGSDTICTNCNGKG 258
Query: 280 HISRNCPD----GTKTCYVCGKPGHI 345
+ CP G C C G +
Sbjct: 259 KLP--CPTCQSRGLIKCQTCDSTGSL 282
Score = 29.1 bits (62), Expect = 8.3
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = +1
Query: 76 RGLRATARXEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHI 210
RGL A C CNG G + QS C C+ TG +
Sbjct: 238 RGLVAHKDGSDTICTNCNGKGKLPCPTCQSRGLIKCQTCDSTGSL 282
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 32.7 bits (71), Expect = 0.68
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Frame = +1
Query: 232 GRDNSNQTCYNCNKSGHISRNCPDGTKT------CYVCGKPGHISRDC 357
G + C C + GH CP T T C +CG GH + DC
Sbjct: 355 GTIRDEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDC 402
Score = 31.1 bits (67), Expect = 2.1
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = +1
Query: 169 DEPSCYNCNKTGHIARNCPEGGRD-NSNQTCYNCNKSGHISRNCP 300
DE C C + GH CP S+ C C GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 32.7 bits (71), Expect = 0.68
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Frame = +1
Query: 232 GRDNSNQTCYNCNKSGHISRNCPDGTKT------CYVCGKPGHISRDC 357
G + C C + GH CP T T C +CG GH + DC
Sbjct: 355 GTIRDEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDC 402
Score = 31.1 bits (67), Expect = 2.1
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = +1
Query: 169 DEPSCYNCNKTGHIARNCPEGGRD-NSNQTCYNCNKSGHISRNCP 300
DE C C + GH CP S+ C C GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403
>At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar to
Chaperone protein dnaJ (SP:Q9WZV3) [Thermotoga maritima]
Length = 97
Score = 32.7 bits (71), Expect = 0.68
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 112 RCYRCNGTGHIARECAQ-SPDEPSCYNCNKTGHIA-RNCPEGG 234
RC CNGTG + C++ S + C C+ +G A NC G
Sbjct: 37 RCPTCNGTGRVTCFCSRWSDGDVGCRRCSGSGRAACSNCGGSG 79
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 32.7 bits (71), Expect = 0.68
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 232 GRDNSNQTCYNCNKSGHISRNC 297
GR S+ CY C +SGH +R C
Sbjct: 90 GRGGSDLKCYECGESGHFAREC 111
Score = 31.5 bits (68), Expect = 1.6
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +1
Query: 55 GSAGNSARGLRATARXEAD-RCYRCNGTGHIAREC 156
G G G R +D +CY C +GH AREC
Sbjct: 77 GRGGGRGGGDGGRGRGGSDLKCYECGESGHFAREC 111
Score = 29.5 bits (63), Expect = 6.3
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +1
Query: 181 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCP 300
CY C ++GH AR C G + + ++S R P
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSRSPPRYRKSP 137
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 32.7 bits (71), Expect = 0.68
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 172 EPSCYNCNKTGHIARNCPEGGRD 240
E C+ C + GH AR+CP G D
Sbjct: 114 EDECFKCRRPGHWARDCPSTGDD 136
Score = 30.7 bits (66), Expect = 2.7
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 79 GLRATARXEADRCYRCNGTGHIARECAQSPDE 174
G + + D C++C GH AR+C + D+
Sbjct: 105 GYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 32.7 bits (71), Expect = 0.68
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 172 EPSCYNCNKTGHIARNCPEGGRD 240
E C+ C + GH AR+CP G D
Sbjct: 114 EDECFKCRRPGHWARDCPSTGDD 136
Score = 30.7 bits (66), Expect = 2.7
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 79 GLRATARXEADRCYRCNGTGHIARECAQSPDE 174
G + + D C++C GH AR+C + D+
Sbjct: 105 GYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 32.3 bits (70), Expect = 0.90
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 172 EPSCYNCNKTGHIARNCPEGG 234
E C+ C + GH AR+CP G
Sbjct: 125 EDECFKCGRVGHWARDCPSAG 145
Score = 29.5 bits (63), Expect = 6.3
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +1
Query: 229 GGRDNSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDC 357
GGRD+ + G G C+ CG+ GH +RDC
Sbjct: 99 GGRDSGYSIAGKGSFGGGGGGGGRVGEDECFKCGRVGHWARDC 141
Score = 29.1 bits (62), Expect = 8.3
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +1
Query: 43 VXSPGSAGNSARGLRATARXEADRCYRCNGTGHIAREC 156
+ GS G G R D C++C GH AR+C
Sbjct: 107 IAGKGSFGGGGGG---GGRVGEDECFKCGRVGHWARDC 141
>At3g31950.1 68416.m04046 hypothetical protein
Length = 507
Score = 32.3 bits (70), Expect = 0.90
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Frame = +1
Query: 121 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC----PEGGRDNSNQTCYNCNKSGHIS 288
R + R+ A +P + C C T H+ +C P ++ CY C GH+S
Sbjct: 268 RATARKSVGRKLA-TPAKRPCDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVS 326
Query: 289 RNCP 300
CP
Sbjct: 327 MYCP 330
>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 282
Score = 31.9 bits (69), Expect = 1.2
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +1
Query: 316 CYVCGKPGHISRDC 357
C+ CG+PGH SRDC
Sbjct: 8 CFKCGRPGHWSRDC 21
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 31.5 bits (68), Expect = 1.6
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +1
Query: 121 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDN 243
R NG G E P C+ CN GH ++CP G N
Sbjct: 191 RMNGRG-FGMERKTPPPGYVCHRCNIPGHFIQHCPTNGDPN 230
>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 947
Score = 31.5 bits (68), Expect = 1.6
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 142 IARECAQSP-DEPSCYNCNKTGHIARNCPEGGRDNSN 249
I RE P + C+ C +TGH A +CP G+ SN
Sbjct: 251 ILREVITYPGQQEKCFVCGQTGHFASDCP--GKSGSN 285
Score = 29.5 bits (63), Expect = 6.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 298 PDGTKTCYVCGKPGHISRDC 357
P + C+VCG+ GH + DC
Sbjct: 259 PGQQEKCFVCGQTGHFASDC 278
>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 831
Score = 31.1 bits (67), Expect = 2.1
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 16/73 (21%)
Frame = +1
Query: 133 TGHIARECAQSPDEPSCYNCNKTGHIARNCPE----------------GGRDNSNQTCYN 264
+G +A + + C+ C K GH R+C E GR+ ++ C
Sbjct: 588 SGSLAENAEEEQRDLICFYCGKKGHCLRDCLEVTDTELRDLVQNISVRNGREEASSLCIR 647
Query: 265 CNKSGHISRNCPD 303
C + H + CP+
Sbjct: 648 CFQLSHWAATCPN 660
Score = 30.7 bits (66), Expect = 2.7
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 199 TGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTKT 315
+G +A N E RD C+ C K GH R+C + T T
Sbjct: 588 SGSLAENAEEEQRD---LICFYCGKKGHCLRDCLEVTDT 623
Score = 30.7 bits (66), Expect = 2.7
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +1
Query: 274 SGHISRNCPDGTKT--CYVCGKPGHISRDCDE 363
SG ++ N + + C+ CGK GH RDC E
Sbjct: 588 SGSLAENAEEEQRDLICFYCGKKGHCLRDCLE 619
>At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein
contains Pfam profile: PF00098 zinc knuckle
Length = 262
Score = 31.1 bits (67), Expect = 2.1
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Frame = +1
Query: 181 CYNCNKTGHIARNC-------PEGGRDNSNQTCYNCNKSGHISRNCPDG 306
C+NC H+ARNC P+ + + + N G NC DG
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDG 136
>At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 474
Score = 30.7 bits (66), Expect = 2.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 253 TCYNCNKSGHISRNCPDGTKTCYV 324
TCY C + GHI++ CP T V
Sbjct: 226 TCYRCKQEGHIAKICPTRETTTKV 249
Score = 30.3 bits (65), Expect = 3.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 172 EPSCYNCNKTGHIARNCP 225
E +CY C + GHIA+ CP
Sbjct: 224 ELTCYRCKQEGHIAKICP 241
>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
[Drosophila melanogaster]
Length = 926
Score = 30.3 bits (65), Expect = 3.6
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +1
Query: 202 GHIARNCPEGGRDNSNQTCYNCNKSGHISRNCP 300
G N +G + C +C + GH S NCP
Sbjct: 749 GTAPSNNIQGSNTRQSNVCIHCQQRGHASTNCP 781
>At4g19130.1 68417.m02823 replication protein-related similar to
replication protein A 70kDa [Oryza sativa] GI:13536993;
contains Pfam profile PF00098: Zinc knuckle
Length = 461
Score = 30.3 bits (65), Expect = 3.6
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 187 NCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTK 312
+ +++G + GG S C C SGH+S CP TK
Sbjct: 392 HAHQSGQSGNHYSGGGATTS---CNVCGNSGHVSAKCPGATK 430
>At4g06479.1 68417.m00885 hypothetical protein
Length = 370
Score = 29.9 bits (64), Expect = 4.8
Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 8/65 (12%)
Frame = +1
Query: 52 PGSAGNSARGLRATARXEADR-CYRCNGTGHIARECAQSP-------DEPSCYNCNKTGH 207
PG + + + A R C C+ T H EC P D CY C GH
Sbjct: 276 PGIQATARKSVGKKLATPAKRPCEICSHTDHPTEECLYPPQTIPYTDDYAKCYYCEGMGH 335
Query: 208 IARNC 222
++ C
Sbjct: 336 MSMYC 340
>At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein
contains INTERPRO domain, IPR001878: Zn-finger CCHC type
Length = 353
Score = 29.9 bits (64), Expect = 4.8
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 244 SNQTCYNCNKSGHISRNCPDGTKT 315
S+ C++C++ GH ++NCP T T
Sbjct: 2 SSGDCFHCHQPGHWAKNCPLKTTT 25
Score = 29.1 bits (62), Expect = 8.3
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +1
Query: 181 CYNCNKTGHIARNCP 225
C++C++ GH A+NCP
Sbjct: 6 CFHCHQPGHWAKNCP 20
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 29.9 bits (64), Expect = 4.8
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1
Query: 169 DEPSCYNCNKTGHIARNCPEG 231
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 29.9 bits (64), Expect = 4.8
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 103 EADRCYRCNGTGHIAREC 156
E +CY C GH AREC
Sbjct: 87 EDSKCYECGELGHFAREC 104
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 29.9 bits (64), Expect = 4.8
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1
Query: 169 DEPSCYNCNKTGHIARNCPEG 231
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 29.9 bits (64), Expect = 4.8
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 103 EADRCYRCNGTGHIAREC 156
E +CY C GH AREC
Sbjct: 87 EDSKCYECGELGHFAREC 104
>At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 532
Score = 29.5 bits (63), Expect = 6.3
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = +1
Query: 112 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 234
RC+ C G H REC + D + + K RN G
Sbjct: 242 RCFNCGGYSHSLRECPRPFDRSAVNSARKLQKSKRNQNSSG 282
>At4g39960.1 68417.m05660 DNAJ heat shock family protein similar to
SP|Q9S5A3 Chaperone protein dnaJ {Listeria
monocytogenes}; contains Pfam profiles PF00226 DnaJ
domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
central domain (4 repeats)
Length = 447
Score = 29.5 bits (63), Expect = 6.3
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +1
Query: 109 DRCYRCNGTGHIARECAQSPDEPS-CYNCNKTGHIARNCPEG-GRDNSNQTCYNCNKSGH 282
+ C CNG+G A++ +P+ C C G + + G TC CN +G
Sbjct: 228 ESCGTCNGSG------AKAGTKPTKCKTCGGQGQVVASTRTPLGVFQQVMTCSPCNGTGE 281
Query: 283 ISRNC 297
IS+ C
Sbjct: 282 ISKPC 286
>At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein
contains Pfam profile PF00098: Zinc knuckle
Length = 200
Score = 29.5 bits (63), Expect = 6.3
Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +1
Query: 142 IARECAQSPDEP-SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRN 294
++R+ ++S E +C+ C + GH +CP + + Y ++ RN
Sbjct: 147 VSRDRSKSKGEKGACWICGEDGHYKNDCPSRNSEKPKEHAYKAQEASVPRRN 198
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 29.5 bits (63), Expect = 6.3
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = +1
Query: 64 GNSARGLRATARXEADRCYRCNGTGHIARECAQS 165
G ++ ++ + RCY C GH++ EC ++
Sbjct: 137 GRASEFIKKRVYKDKSRCYECGDEGHLSYECPKN 170
>At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 403
Score = 29.5 bits (63), Expect = 6.3
Identities = 13/42 (30%), Positives = 17/42 (40%)
Frame = +1
Query: 112 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 237
RC+ C H REC + D + N + RN G R
Sbjct: 197 RCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
>At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 405
Score = 29.5 bits (63), Expect = 6.3
Identities = 13/42 (30%), Positives = 17/42 (40%)
Frame = +1
Query: 112 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 237
RC+ C H REC + D + N + RN G R
Sbjct: 197 RCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
>At5g02070.1 68418.m00128 protein kinase-related contains eukaryotic
protein kinase domain, INTERPRO:IPR000719
Length = 657
Score = 29.1 bits (62), Expect = 8.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 144 YVPRAITSVATVSLLPCSRAQTSCRIXCRP 55
++P +ITS T+ LL CS+A I C P
Sbjct: 125 HLPFSITSSNTILLLNCSQAMLQAPIDCSP 154
>At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 735
Score = 29.1 bits (62), Expect = 8.3
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 11/52 (21%)
Frame = +1
Query: 175 PSCYNCNKTGHIARNCPEGGRDNSN-----------QTCYNCNKSGHISRNC 297
P C++C GHI C R+ + CY+ GHI RNC
Sbjct: 626 PVCHHCGVVGHIRPRCFRLLREKNRLMNAYDVRFHGPKCYHYGVQGHIKRNC 677
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 29.1 bits (62), Expect = 8.3
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +1
Query: 97 RXEADRCYRCNGTGHIARECAQSP 168
+ + + C++C T HIA++C P
Sbjct: 336 KGKGNGCFKCGSTDHIAKDCVGGP 359
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,889,266
Number of Sequences: 28952
Number of extensions: 379667
Number of successful extensions: 1320
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1167
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4212064704
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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