Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_A02_e489_02.seq
         (1427 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom...   182   1e-46
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi...    29   2.1  
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar...    28   3.6  
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    27   4.8  

>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 188

 Score =  182 bits (442), Expect = 1e-46
 Identities = 84/183 (45%), Positives = 127/183 (69%)
 Frame = +3

Query: 258 LKNLTFVTGNVKKLEELRAILGSSFPLEIVNYNLDLPELQGEIDEVSIKKCQEAASRLKI 437
           L+++ FVTGN  KL +++ ILG  F  EI N++ DLPE+QG + EV ++KC+ AA  +K 
Sbjct: 4   LQSILFVTGNKHKLADVKNILGDRF--EIKNHDYDLPEIQGSVKEVVLEKCKAAAEIVKG 61

Query: 438 PVLVEDTSLCFTALHGLPGPYIKWFLDKLKPEGLTQLLAGWEDKSAEAVCTFAFCAGNCE 617
           PVLVEDT L + A++GLPGPY+KWFL+ + P+GL ++++ ++ K A+A CTF +  G   
Sbjct: 62  PVLVEDTWLGYKAMNGLPGPYVKWFLNSVGPDGLYRMVSAFDTKEAQAGCTFGYTKG--P 119

Query: 618 NLDVILFQGKTRGKIVAPRGNRDFGWDCVFQPDGYNQTYAELSKIEKNKISHRFKALDKF 797
              + LF+G   G++V PRG+  FGW+ +FQP+G+  TYAE++  E+N  SHR+ A  K 
Sbjct: 120 GKPIHLFEGILDGQVVPPRGSNGFGWNSIFQPNGHKHTYAEMTDEERNSCSHRYLAAMKL 179

Query: 798 RAY 806
           R +
Sbjct: 180 RDF 182


>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 294 KLEELRAILGSS-FPLEIVNYNLDLPEL 374
           K++EL   +    FP+EIVN N+D PEL
Sbjct: 233 KIKELAKYIDPKLFPIEIVNDNIDNPEL 260


>SPBC530.14c |dsk1||SR protein-specific kinase
           Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +3

Query: 366 PELQGEIDEVSIKKCQEAASRLKIPVLVEDTSLCFTALHGLPGPYIK 506
           P L+G + E+S++  Q+  S    P    D SL    ++G   P  K
Sbjct: 307 PSLEGAVSEISLRDSQKHNSHPNSPFSSGDNSLILDGVNGSQEPVPK 353


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = -2

Query: 637 NNMTSRFSQLPAQNAKVHTASADLSSHPASNCVRPSGLSLSRNHLMYGPGS 485
           N   S F Q P ++  V     D   H   +C+ PSG + S +   Y P S
Sbjct: 365 NKSNSYFFQNPPKSNSVDYTRLDNLEHMRQSCISPSGTNFSPS--CYSPES 413


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,566,605
Number of Sequences: 5004
Number of extensions: 85824
Number of successful extensions: 209
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 794871200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)