Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_A02_e489_02.seq
(1427 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0257 - 16255063-16255183,16255258-16255334,16255861-162559... 191 1e-48
06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991 30 3.9
05_04_0334 - 20341186-20341422,20341509-20341569,20341652-203417... 30 5.1
04_04_0613 + 26617677-26617963,26618726-26618786,26619598-266198... 29 6.8
02_05_0096 + 25785995-25786311,25786716-25786776,25787825-257880... 29 6.8
01_06_1609 + 38621264-38621386,38621521-38621578,38621778-386220... 29 6.8
01_06_0670 + 31069976-31070073,31070461-31070581,31070669-310707... 29 6.8
10_08_0553 - 18720436-18720494,18721102-18721106,18721136-187212... 29 9.0
>10_08_0257 -
16255063-16255183,16255258-16255334,16255861-16255973,
16256006-16256016,16256328-16256337,16256423-16256486,
16256582-16256646,16257339-16257474
Length = 198
Score = 191 bits (466), Expect = 1e-48
Identities = 105/183 (57%), Positives = 127/183 (69%)
Frame = +3
Query: 261 KNLTFVTGNVKKLEELRAILGSSFPLEIVNYNLDLPELQGEIDEVSIKKCQEAASRLKIP 440
K +TFVTGN KKLEE+RAILGSS P + + LDLPELQGE +++S +K + AAS++ P
Sbjct: 14 KAVTFVTGNAKKLEEVRAILGSSIPFQ--SLKLDLPELQGEPEDISKEKARMAASQVNGP 71
Query: 441 VLVEDTSLCFTALHGLPGPYIKWFLDKLKPEGLTQLLAGWEDKSAEAVCTFAFCAGNCEN 620
VLVEDT LCF AL GLPGPYI D L L LL +EDKSA A+C F+ G E
Sbjct: 72 VLVEDTCLCFNALKGLPGPYI----DLLS---LNNLLLAYEDKSAFAMCIFSLALGPGE- 123
Query: 621 LDVILFQGKTRGKIVAPRGNRDFGWDCVFQPDGYNQTYAELSKIEKNKISHRFKALDKFR 800
+ + F GKT GKIV RG DFGWD VFQPDG++QTYAE+ K KN+ISHR KAL +
Sbjct: 124 -EPMTFVGKTAGKIVPARGPADFGWDPVFQPDGFDQTYAEMPKSVKNQISHRGKALALVK 182
Query: 801 AYF 809
+F
Sbjct: 183 EHF 185
>06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991
Length = 276
Score = 30.3 bits (65), Expect = 3.9
Identities = 22/62 (35%), Positives = 31/62 (50%)
Frame = -2
Query: 670 GATIFPLVLPWNNMTSRFSQLPAQNAKVHTASADLSSHPASNCVRPSGLSLSRNHLMYGP 491
GAT PL P+N+ PA+N V A+ +L++ P+S SG S+ H P
Sbjct: 33 GATAPPLRHPYNHND------PAENPGVIRAADNLAAAPSSRPATSSGHRESQRHHQQPP 86
Query: 490 GS 485
GS
Sbjct: 87 GS 88
>05_04_0334 -
20341186-20341422,20341509-20341569,20341652-20341719,
20341800-20342009,20342714-20342754,20342909-20342958,
20343069-20343157,20343233-20343307,20343498-20343598,
20343758-20343812,20343909-20344025,20344672-20344892,
20345525-20345582,20345706-20345822
Length = 499
Score = 29.9 bits (64), Expect = 5.1
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +1
Query: 76 EGNQKKVISXSSYLVVFVCMFLILN 150
E + KKV+ S YL VFV +FL+LN
Sbjct: 268 ESDFKKVVGISWYLWVFVVIFLLLN 292
>04_04_0613 +
26617677-26617963,26618726-26618786,26619598-26619832,
26619958-26620196,26620493-26620744,26620844-26621024,
26621810-26621898,26622200-26622273,26622365-26622443
Length = 498
Score = 29.5 bits (63), Expect = 6.8
Identities = 22/99 (22%), Positives = 47/99 (47%)
Frame = +3
Query: 486 LPGPYIKWFLDKLKPEGLTQLLAGWEDKSAEAVCTFAFCAGNCENLDVILFQGKTRGKIV 665
LP PY+ +D+L +G+TQ A E++ + C + N +I R +++
Sbjct: 319 LPKPYVINLMDELTLKGITQFYAFVEERQ-KVHCLNTLFSKLQINQSIIFCNSVNRVELL 377
Query: 666 APRGNRDFGWDCVFQPDGYNQTYAELSKIEKNKISHRFK 782
A + + G+ C + +A++ + +N++ H F+
Sbjct: 378 AKK-ITELGYSCFY-------IHAKMLQDHRNRVFHDFR 408
>02_05_0096 +
25785995-25786311,25786716-25786776,25787825-25788059,
25788292-25788530,25789700-25789951,25790043-25790223,
25790864-25790952,25791269-25791342,25791481-25791584,
25791919-25791957,25792324-25792436
Length = 567
Score = 29.5 bits (63), Expect = 6.8
Identities = 22/99 (22%), Positives = 47/99 (47%)
Frame = +3
Query: 486 LPGPYIKWFLDKLKPEGLTQLLAGWEDKSAEAVCTFAFCAGNCENLDVILFQGKTRGKIV 665
LP PY+ +D+L +G+TQ A E++ + C + N +I R +++
Sbjct: 329 LPKPYVINLMDELTLKGITQFYAFVEERQ-KVHCLNTLFSKLQINQSIIFCNSVNRVELL 387
Query: 666 APRGNRDFGWDCVFQPDGYNQTYAELSKIEKNKISHRFK 782
A + + G+ C + +A++ + +N++ H F+
Sbjct: 388 AKK-ITELGYSCFY-------IHAKMLQDHRNRVFHDFR 418
>01_06_1609 +
38621264-38621386,38621521-38621578,38621778-38622013,
38622536-38622652,38622690-38622798,38622973-38623064,
38623191-38623265,38623333-38623421,38623576-38623625,
38623830-38623870,38623963-38624172,38624278-38624345,
38624434-38624494,38624607-38624840
Length = 520
Score = 29.5 bits (63), Expect = 6.8
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 76 EGNQKKVISXSSYLVVFVCMFLILN 150
E + KKV+ S YL +FV +FL+LN
Sbjct: 290 EADFKKVVGISWYLWIFVMIFLLLN 314
>01_06_0670 +
31069976-31070073,31070461-31070581,31070669-31070743,
31070863-31071014,31071171-31071276,31071409-31071474,
31071562-31071657,31071764-31071835,31071925-31072008,
31072147-31072245,31072721-31072768,31072857-31072910,
31072991-31073089,31073182-31073271,31073371-31073448,
31073584-31073658,31073806-31073896,31074014-31074142,
31074235-31074323
Length = 573
Score = 29.5 bits (63), Expect = 6.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 550 SNCVRPSGLSLSRNHLMYGPGSPCSAVKHND 458
S C S S+ ++G GSP VK+ND
Sbjct: 434 SECTAEQAYSWSKGRAIFGSGSPFDPVKYND 464
>10_08_0553 -
18720436-18720494,18721102-18721106,18721136-18721257,
18721390-18721478,18722136-18722316,18722403-18722654,
18722755-18722993,18723680-18723914,18724072-18724132,
18724632-18724987
Length = 532
Score = 29.1 bits (62), Expect = 9.0
Identities = 22/99 (22%), Positives = 47/99 (47%)
Frame = +3
Query: 486 LPGPYIKWFLDKLKPEGLTQLLAGWEDKSAEAVCTFAFCAGNCENLDVILFQGKTRGKIV 665
LP PY+ +D+L +G+TQ A E++ + C + N +I R +++
Sbjct: 342 LPRPYVINLMDELTLKGITQYYAFVEERQ-KVHCLNTLFSKLQINQSIIFCNSVNRVELL 400
Query: 666 APRGNRDFGWDCVFQPDGYNQTYAELSKIEKNKISHRFK 782
A + + G+ C + +A++ + +N++ H F+
Sbjct: 401 AKK-ITELGYSCFY-------IHAKMLQDHRNRVFHDFR 431
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,829,340
Number of Sequences: 37544
Number of extensions: 558519
Number of successful extensions: 1042
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4524822120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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