Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_A02_e489_02.seq
         (1427 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20665| Best HMM Match : 7tm_3 (HMM E-Value=1.8e-10)                 30   3.9  
SB_3934| Best HMM Match : G2F (HMM E-Value=0.0062)                     30   3.9  
SB_42027| Best HMM Match : CorA (HMM E-Value=0.65)                     30   5.2  
SB_45949| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.1  
SB_25453| Best HMM Match : Hox9_act (HMM E-Value=0.54)                 29   9.1  

>SB_20665| Best HMM Match : 7tm_3 (HMM E-Value=1.8e-10)
          Length = 1514

 Score = 30.3 bits (65), Expect = 3.9
 Identities = 16/48 (33%), Positives = 29/48 (60%)
 Frame = +1

Query: 562  KINLQRLCALLHFVLVTVKILMSYYSKVKPEEKS*PQEVIETLVGIVS 705
            +I L+ L A +  + +T+ +L+ YY K K    S P+ +I T+ G+V+
Sbjct: 1160 RIFLETLNAAVIVMAITLGVLIYYYRKHKVVRASSPRFLIMTVAGVVT 1207


>SB_3934| Best HMM Match : G2F (HMM E-Value=0.0062)
          Length = 193

 Score = 30.3 bits (65), Expect = 3.9
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = +3

Query: 372 LQGEIDEVSIKKCQEAASRLKIPVLVEDTSLCFTALHGLPGPYIKW 509
           ++G ++ V + K    A+  K    V DT  C  ALHGLPGP   W
Sbjct: 12  VRGLVNNVRLPKFTLRANMTKRTARVTDTE-C--ALHGLPGPIKNW 54


>SB_42027| Best HMM Match : CorA (HMM E-Value=0.65)
          Length = 369

 Score = 29.9 bits (64), Expect = 5.2
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -2

Query: 319 KIALSSSNFLTLPVTKVRFLRDIIFVVLL 233
           +  LS SN  T+P   + F+RDII++++L
Sbjct: 243 QFVLSKSNDATIPHEDLHFIRDIIWIIVL 271


>SB_45949| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 29.1 bits (62), Expect = 9.1
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -1

Query: 107 DXEITFFWXPSCRIXCSPGDXTSX*XRPPPRGSXS 3
           D   TF + P+    CSPGD      RPPPR S +
Sbjct: 15  DIFTTFVFDPNTSNSCSPGDPLVL-ERPPPRWSSN 48


>SB_25453| Best HMM Match : Hox9_act (HMM E-Value=0.54)
          Length = 176

 Score = 29.1 bits (62), Expect = 9.1
 Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 4/98 (4%)
 Frame = -2

Query: 721 YPSG*KTQSQPKSLLPLGATIFPLVLPWNNMTSR----FSQLPAQNAKVHTASADLSSHP 554
           +P   +  + PKS  P G+   P    W+N+        S + A N    T  AD+ S  
Sbjct: 41  HPPSRRPDATPKSH-PAGSAAVPAWYRWHNVLYEGHPYHSNITAGNPNGSTNDADIVSGH 99

Query: 553 ASNCVRPSGLSLSRNHLMYGPGSPCSAVKHNDVSSTNT 440
           AS    PS  +L     +   GSP   ++H   S T T
Sbjct: 100 ASVPSFPSHTTLKSCRTLRAKGSP---LEHGSSSRTPT 134


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,324,939
Number of Sequences: 59808
Number of extensions: 644799
Number of successful extensions: 1308
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1300
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4577733030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)