Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_A02_e489_02.seq
(1427 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13642-1|AAG00041.1| 184|Caenorhabditis elegans Yeast ham (hydr... 213 3e-55
AY052772-1|AAL14111.1| 184|Caenorhabditis elegans HAM-1-like pr... 213 3e-55
Z70268-1|CAA94217.1| 390|Caenorhabditis elegans Hypothetical pr... 32 1.1
AF078785-4|AAC27089.3| 609|Caenorhabditis elegans Hypothetical ... 30 4.6
Z93396-5|CAB07714.1| 633|Caenorhabditis elegans Hypothetical pr... 29 8.1
DQ645956-1|ABG36764.1| 624|Caenorhabditis elegans molting prote... 29 8.1
AF077537-13|AAC26282.1| 190|Caenorhabditis elegans Hypothetical... 29 8.1
>U13642-1|AAG00041.1| 184|Caenorhabditis elegans Yeast ham
(hydroxylaminopurinesensitivity) related protein 1
protein.
Length = 184
Score = 213 bits (519), Expect = 3e-55
Identities = 104/186 (55%), Positives = 134/186 (72%)
Frame = +3
Query: 252 MSLKNLTFVTGNVKKLEELRAILGSSFPLEIVNYNLDLPELQGEIDEVSIKKCQEAASRL 431
MSL+ + FVTGNVKKLEE++AIL + E+ N ++DL E QGE + ++ +KC+EA +
Sbjct: 1 MSLRKINFVTGNVKKLEEVKAILKN---FEVSNVDVDLDEFQGEPEFIAERKCREAVEAV 57
Query: 432 KIPVLVEDTSLCFTALHGLPGPYIKWFLDKLKPEGLTQLLAGWEDKSAEAVCTFAFCAGN 611
K PVLVEDTSLCF A+ GLPGPYIKWFL LKPEGL +LAG+ DK+A A C FA+ G
Sbjct: 58 KGPVLVEDTSLCFNAMGGLPGPYIKWFLKNLKPEGLHNMLAGFSDKTAYAQCIFAYTEGL 117
Query: 612 CENLDVILFQGKTRGKIVAPRGNRDFGWDCVFQPDGYNQTYAELSKIEKNKISHRFKALD 791
+ + V F GK G+IVAPRG+ FGWD FQPDG+ +T+ E+ K KN+ISHR KAL+
Sbjct: 118 GKPIHV--FAGKCPGQIVAPRGDTAFGWDPCFQPDGFKETFGEMDKDVKNEISHRAKALE 175
Query: 792 KFRAYF 809
+ YF
Sbjct: 176 LLKEYF 181
>AY052772-1|AAL14111.1| 184|Caenorhabditis elegans HAM-1-like
protein protein.
Length = 184
Score = 213 bits (519), Expect = 3e-55
Identities = 104/186 (55%), Positives = 134/186 (72%)
Frame = +3
Query: 252 MSLKNLTFVTGNVKKLEELRAILGSSFPLEIVNYNLDLPELQGEIDEVSIKKCQEAASRL 431
MSL+ + FVTGNVKKLEE++AIL + E+ N ++DL E QGE + ++ +KC+EA +
Sbjct: 1 MSLRKINFVTGNVKKLEEVKAILKN---FEVSNVDVDLDEFQGEPEFIAERKCREAVEAV 57
Query: 432 KIPVLVEDTSLCFTALHGLPGPYIKWFLDKLKPEGLTQLLAGWEDKSAEAVCTFAFCAGN 611
K PVLVEDTSLCF A+ GLPGPYIKWFL LKPEGL +LAG+ DK+A A C FA+ G
Sbjct: 58 KGPVLVEDTSLCFNAMGGLPGPYIKWFLKNLKPEGLHNMLAGFSDKTAYAQCIFAYTEGL 117
Query: 612 CENLDVILFQGKTRGKIVAPRGNRDFGWDCVFQPDGYNQTYAELSKIEKNKISHRFKALD 791
+ + V F GK G+IVAPRG+ FGWD FQPDG+ +T+ E+ K KN+ISHR KAL+
Sbjct: 118 GKPIHV--FAGKCPGQIVAPRGDTAFGWDPCFQPDGFKETFGEMDKDVKNEISHRAKALE 175
Query: 792 KFRAYF 809
+ YF
Sbjct: 176 LLKEYF 181
>Z70268-1|CAA94217.1| 390|Caenorhabditis elegans Hypothetical
protein T21E8.4 protein.
Length = 390
Score = 31.9 bits (69), Expect = 1.1
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 687 FGWDCVFQPDGYNQTYAELSKIEKNKISHRFKALDK 794
FG C +P GY + +L ++EK K + K LDK
Sbjct: 4 FGKLCFSRPLGYEEKQEKLYRVEKTKAEKKMKILDK 39
>AF078785-4|AAC27089.3| 609|Caenorhabditis elegans Hypothetical
protein C04E12.4 protein.
Length = 609
Score = 29.9 bits (64), Expect = 4.6
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = -1
Query: 716 IRLKDTIPTKVSITSWGYDFSS-GFTLE*YDIKI 618
I +K+ I ++ + +W +DF+S G T+E DIK+
Sbjct: 502 IHMKEPINKRIGLINWEFDFNSPGRTVEKLDIKL 535
>Z93396-5|CAB07714.1| 633|Caenorhabditis elegans Hypothetical
protein ZC15.7 protein.
Length = 633
Score = 29.1 bits (62), Expect = 8.1
Identities = 20/65 (30%), Positives = 32/65 (49%)
Frame = +3
Query: 501 IKWFLDKLKPEGLTQLLAGWEDKSAEAVCTFAFCAGNCENLDVILFQGKTRGKIVAPRGN 680
+K F++ LK + +L + +DK + +A C N E L ++LF V P G
Sbjct: 147 LKIFVEILKTPKVMELFSIVKDKRDRSPLHYAACKVNLEALRILLF--------VDPNGG 198
Query: 681 RDFGW 695
DFG+
Sbjct: 199 PDFGF 203
>DQ645956-1|ABG36764.1| 624|Caenorhabditis elegans molting protein
MLT-4 protein.
Length = 624
Score = 29.1 bits (62), Expect = 8.1
Identities = 20/65 (30%), Positives = 32/65 (49%)
Frame = +3
Query: 501 IKWFLDKLKPEGLTQLLAGWEDKSAEAVCTFAFCAGNCENLDVILFQGKTRGKIVAPRGN 680
+K F++ LK + +L + +DK + +A C N E L ++LF V P G
Sbjct: 147 LKIFVEILKTPKVMELFSIVKDKRDRSPLHYAACKVNLEALRILLF--------VDPNGG 198
Query: 681 RDFGW 695
DFG+
Sbjct: 199 PDFGF 203
>AF077537-13|AAC26282.1| 190|Caenorhabditis elegans Hypothetical
protein F16G10.1 protein.
Length = 190
Score = 29.1 bits (62), Expect = 8.1
Identities = 20/100 (20%), Positives = 42/100 (42%), Gaps = 1/100 (1%)
Frame = +3
Query: 252 MSLKNLTFVTGNVKKLEELRAILGSSFPLEIVNYNLDLPEL-QGEIDEVSIKKCQEAASR 428
M+ + T +G + E+ + + + PEL GE+ S KC + ++
Sbjct: 22 MAPRETTMASGENTEAPEMSTMAPGDMSTPETSEETEAPELISGEVCPTSTTKCPDLSTV 81
Query: 429 LKIPVLVEDTSLCFTALHGLPGPYIKWFLDKLKPEGLTQL 548
+K P++V + C A+ P + + + + LT +
Sbjct: 82 VKAPMMVGEMGGC--AVFSCPPGLLPFIIGVFEESELTDV 119
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,987,426
Number of Sequences: 27780
Number of extensions: 514098
Number of successful extensions: 1461
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1454
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4069011098
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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