Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_A02_e489_02.seq
         (1427 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    27   0.53 
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    24   2.8  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    24   2.8  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    24   2.8  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    24   2.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   6.5  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   6.5  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 26.6 bits (56), Expect = 0.53
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 696 PNQSLYYLLGLRFFLWFYLGII 631
           PN SL+YLL L + L+ +L ++
Sbjct: 43  PNPSLHYLLALLYILFTFLALL 64


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 2.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 756 SLFSITLHRFDYIHQAERHNPNQSLYY 676
           SL + T+H  +Y +    +N N+ LYY
Sbjct: 84  SLSNNTIHNNNYKYNYNNNNYNKKLYY 110


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 2.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 756 SLFSITLHRFDYIHQAERHNPNQSLYY 676
           SL + T+H  +Y +    +N N+ LYY
Sbjct: 84  SLSNNTIHNNNYKYNYNNNNYNKKLYY 110


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 2.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 756 SLFSITLHRFDYIHQAERHNPNQSLYY 676
           SL + T+H  +Y +    +N N+ LYY
Sbjct: 84  SLSNNTIHNNNYKYNYNNNNYNKKLYY 110


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 2.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 756 SLFSITLHRFDYIHQAERHNPNQSLYY 676
           SL + T+H  +Y +    +N N+ LYY
Sbjct: 84  SLSNNTIHNNNYKYNYNNNNYNKKLYY 110


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 6.5
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = -3

Query: 618 FHSYQHKMQKCTQPLQIYLPI 556
           F +  ++MQ+  QP+Q+Y+ +
Sbjct: 286 FRTPTYRMQQVEQPVQVYIQL 306


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.0 bits (47), Expect = 6.5
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = -3

Query: 618 FHSYQHKMQKCTQPLQIYLPI 556
           F +  ++MQ+  QP+Q+Y+ +
Sbjct: 286 FRTPTYRMQQVEQPVQVYIQL 306


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 329,314
Number of Sequences: 438
Number of extensions: 6607
Number of successful extensions: 20
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 49826145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)