Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_A02_e489_02.seq
         (1427 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13720.1 68417.m02130 inosine triphosphate pyrophosphatase, p...   221   9e-58
At4g24250.1 68417.m03480 seven transmembrane MLO family protein ...    29   7.5  
At2g44110.2 68415.m05486 seven transmembrane MLO family protein ...    29   7.5  
At2g44110.1 68415.m05485 seven transmembrane MLO family protein ...    29   7.5  
At4g02600.1 68417.m00354 seven transmembrane MLO family protein ...    29   9.9  
At4g00920.1 68417.m00125 COP1-interacting protein-related simila...    29   9.9  

>At4g13720.1 68417.m02130 inosine triphosphate pyrophosphatase,
           putative / HAM1 family protein contains Pfam profile
           PF01725: Ham1 family; similar to inosine triphosphate
           pyrophosphatase (GI:13398328) [Homo sapiens]
          Length = 206

 Score =  221 bits (540), Expect = 9e-58
 Identities = 108/181 (59%), Positives = 136/181 (75%)
 Frame = +3

Query: 267 LTFVTGNVKKLEELRAILGSSFPLEIVNYNLDLPELQGEIDEVSIKKCQEAASRLKIPVL 446
           +TFVTGN KKLEE++AI+G+S P +  +  LDLPELQGE +++S +K + AA ++  PVL
Sbjct: 16  VTFVTGNAKKLEEVKAIIGNSIPFK--SLKLDLPELQGEPEDISKEKARLAALQVDGPVL 73

Query: 447 VEDTSLCFTALHGLPGPYIKWFLDKLKPEGLTQLLAGWEDKSAEAVCTFAFCAGNCENLD 626
           VEDT LCF AL GLPGPYIKWFL+KL  EGL  LL  +EDKSA A+C F+F  G     +
Sbjct: 74  VEDTCLCFNALKGLPGPYIKWFLEKLGHEGLNNLLMAYEDKSAYALCAFSFSRG--PGAE 131

Query: 627 VILFQGKTRGKIVAPRGNRDFGWDCVFQPDGYNQTYAELSKIEKNKISHRFKALDKFRAY 806
            + F GKT GKIV  RG  DFGWD VFQPDGY+QTYAE++K EKNKISHR+K+L   +++
Sbjct: 132 PLTFLGKTPGKIVPARGPTDFGWDPVFQPDGYDQTYAEMAKEEKNKISHRYKSLALVKSH 191

Query: 807 F 809
           F
Sbjct: 192 F 192


>At4g24250.1 68417.m03480 seven transmembrane MLO family protein /
           MLO-like protein 13 (MLO13) identical to membrane
           protein Mlo13 [Arabidopsis thaliana]
           gi|14091596|gb|AAK53806; similar to MLO protein
           SWISS-PROT:P93766, NCBI_gi:1877221 [Hordeum
           vulgare][Barley]
          Length = 478

 Score = 29.1 bits (62), Expect = 7.5
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = +1

Query: 88  KKVISXSSYLVVFVCMFLILN 150
           KKV+S S YL +FV +FL+LN
Sbjct: 275 KKVVSISWYLWLFVVVFLLLN 295


>At2g44110.2 68415.m05486 seven transmembrane MLO family protein /
           MLO-like protein 15 (MLO15) identical to MLO-like
           protein 15 (AtMlo15) SP:O80580 from [Arabidopsis
           thaliana]; similar to MLO protein SWISS-PROT:P93766,
           NCBI_gi:1877221 [Hordeum vulgare][Barley]
          Length = 497

 Score = 29.1 bits (62), Expect = 7.5
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +1

Query: 88  KKVISXSSYLVVFVCMFLILN 150
           KKV+  S YL VFV +FL+LN
Sbjct: 272 KKVVGISWYLWVFVVLFLLLN 292


>At2g44110.1 68415.m05485 seven transmembrane MLO family protein /
           MLO-like protein 15 (MLO15) identical to MLO-like
           protein 15 (AtMlo15) SP:O80580 from [Arabidopsis
           thaliana]; similar to MLO protein SWISS-PROT:P93766,
           NCBI_gi:1877221 [Hordeum vulgare][Barley]
          Length = 496

 Score = 29.1 bits (62), Expect = 7.5
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +1

Query: 88  KKVISXSSYLVVFVCMFLILN 150
           KKV+  S YL VFV +FL+LN
Sbjct: 271 KKVVGISWYLWVFVVLFLLLN 291


>At4g02600.1 68417.m00354 seven transmembrane MLO family protein /
           MLO-like protein 1 (MLO1) identical to MLO-like protein
           1 (MLO protein homolog 1) [Arabidopsis thaliana]
           SWISS-PROT:O49621; similar to MLO protein
           SWISS-PROT:P93766, NCBI_gi:1877221 [Hordeum
           vulgare][Barley]
          Length = 526

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +1

Query: 76  EGNQKKVISXSSYLVVFVCMFLILN-NLLKF*MYIAYINF 192
           E + K+V+  S YL +FV +FL+LN N      +IA+I F
Sbjct: 282 EDDFKQVVGISWYLWIFVVIFLLLNVNGWHTYFWIAFIPF 321


>At4g00920.1 68417.m00125 COP1-interacting protein-related similar
           to COP1-interacting protein 4 (CIP4) [Arabidopsis
           thaliana] GI:13160646
          Length = 314

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
 Frame = -1

Query: 821 TFIHKICSKFV*CFKSMGNLVFLYFR*LCIG----LIISIRLKDTIPTK 687
           TF  KIC +   CF S GN+     +  C G    L+ S+ L    P+K
Sbjct: 37  TFKEKICKEHETCFPSFGNITISALKVKCGGQFYHLVDSLILNTAFPSK 85


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,220,590
Number of Sequences: 28952
Number of extensions: 455581
Number of successful extensions: 1002
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3768689472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)