Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_A01_e481_01.seq
         (1499 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    26   2.5  
AY705403-1|AAU12512.1|  520|Anopheles gambiae nicotinic acetylch...    25   5.7  
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    25   5.7  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    25   5.7  
AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    25   7.5  

>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 10/39 (25%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 886 NDPXIEVQSRFA-HXKAFFYFLXLILKCLGF*FVILIAF 773
           ++P +++        K  FY + LI+ C+G  F+ ++ F
Sbjct: 223 DEPYLDITFNITMRRKTLFYTVNLIIPCMGISFLTILVF 261


>AY705403-1|AAU12512.1|  520|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 8 protein.
          Length = 520

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 844 KAFFYFLXLILKCLGF*FVILIAF 773
           K  FY + LI+ C+G  F+ ++ F
Sbjct: 244 KTLFYTVNLIIPCVGITFLTVLVF 267


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 9/39 (23%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 886 NDPXIEVQSRFA-HXKAFFYFLXLILKCLGF*FVILIAF 773
           ++P +++        K  FY + +I+ C+G  F+ ++ F
Sbjct: 227 DEPYLDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTF 265


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 9/39 (23%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 886 NDPXIEVQSRFA-HXKAFFYFLXLILKCLGF*FVILIAF 773
           ++P +++        K  FY + +I+ C+G  F+ ++ F
Sbjct: 227 DEPYLDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTF 265


>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 844 KAFFYFLXLILKCLGF*FVILIAF 773
           K  FY + LI+ C+G  F+ ++ F
Sbjct: 238 KTLFYTVNLIIPCVGISFLSVLVF 261


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 922,530
Number of Sequences: 2352
Number of extensions: 13607
Number of successful extensions: 28
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 563,979
effective HSP length: 67
effective length of database: 406,395
effective search space used: 175562640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)