Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_A01_e481_01.seq
         (1499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    26   0.97 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   1.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   1.7  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    25   1.7  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    25   2.2  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 25.8 bits (54), Expect = 0.97
 Identities = 10/39 (25%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 886 NDPXIEVQSRFA-HXKAFFYFLXLILKCLGF*FVILIAF 773
           ++P +++        K  FY + LI+ C+G  F+ ++ F
Sbjct: 224 DEPYLDITFNITMRRKTLFYTVNLIIPCMGISFLTVLVF 262


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 9/39 (23%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 886 NDPXIEVQSRFA-HXKAFFYFLXLILKCLGF*FVILIAF 773
           ++P +++        K  FY + +I+ C+G  F+ ++ F
Sbjct: 228 DEPYLDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTF 266


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 9/39 (23%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 886 NDPXIEVQSRFA-HXKAFFYFLXLILKCLGF*FVILIAF 773
           ++P +++        K  FY + +I+ C+G  F+ ++ F
Sbjct: 228 DEPYLDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTF 266


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 844 KAFFYFLXLILKCLGF*FVILIAF 773
           K  FY + LI+ C+G  F+ ++ F
Sbjct: 248 KTLFYTVNLIIPCVGITFLTVLVF 271


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 844 KAFFYFLXLILKCLGF*FVILIAF 773
           K  FY + LI+ C+G  F+ ++ F
Sbjct: 235 KTLFYTVNLIIPCVGISFLSVLVF 258


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 258,935
Number of Sequences: 438
Number of extensions: 4745
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 52395750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)